SOCR Data July2009 ID NI - Revision history

Dinov at 14:31, 7 November 2014

2014-11-07T14:31:38Z

Dinov at 14:30, 7 November 2014

2014-11-07T14:30:53Z

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IvoDinov: /* References */

2011-06-01T01:01:42Z

‎References

IvoDinov: /* Data */

2009-07-24T20:51:07Z

‎Data

IvoDinov at 20:46, 24 July 2009

2009-07-24T20:46:23Z

IvoDinov: /* Data */

2009-07-24T20:42:26Z

‎Data

IvoDinov: /* Data */

2009-07-24T17:16:17Z

‎Data

IvoDinov at 06:21, 24 July 2009

2009-07-24T06:21:39Z

IvoDinov: /* Data Description */

2009-07-24T06:20:04Z

‎Data Description

IvoDinov: /* Data Overview */

2009-07-24T06:19:37Z

‎Data Overview

@@ Line 1,386: / Line 1,386: @@
 The summary table below only shows the Global Cortical Surface Curvedness measures for all 104 subjects (27 AD, 35 NC and 42 MCI). These data can be used for various types of analytics (e.g., [[SMHS_ROC|ROC/AUC studies]]).
-| class="wikitable" style="text-align:center;" border="2"
+{| class="wikitable" style="text-align:center;" border="2"
 |-
 ! Subject_ID||Group||MMSE||CDR||Sex||Age||TBV||GMV||WMV||CSFV||Curvedness

← Older revision		Revision as of 01:01, 1 June 2011
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	* David W. Shattuck, Mubeena Mirza, Vitria Adisetiyo, Cornelius Hojatkashani, Georges Salamon, Katherine L. Narr, Russell A. Poldrack, Robert M. Bilder, Arthur W. Toga, Construction of a 3D probabilistic atlas of human cortical structures, NeuroImage, Volume 39, Issue 3, 1 February 2008, Pages 1064-1080, ISSN 1053-8119, DOI: [http://dx.doi.org/10.1016/j.neuroimage.2007.09.031 10.1016/j.neuroimage.2007.09.031].		* David W. Shattuck, Mubeena Mirza, Vitria Adisetiyo, Cornelius Hojatkashani, Georges Salamon, Katherine L. Narr, Russell A. Poldrack, Robert M. Bilder, Arthur W. Toga, Construction of a 3D probabilistic atlas of human cortical structures, NeuroImage, Volume 39, Issue 3, 1 February 2008, Pages 1064-1080, ISSN 1053-8119, DOI: [http://dx.doi.org/10.1016/j.neuroimage.2007.09.031 10.1016/j.neuroimage.2007.09.031].
		+
		+	* Christou N, Dinov ID (2011) [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019178 Confidence Interval Based Parameter Estimation—A New SOCR Applet and Activity]. [http://www.plosone.org PLoS ONE] 6(5): e19178. [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019178 doi:10.1371/journal.pone.0019178].

@@ Line 25: / Line 25: @@
 ===Data===
-[http://www.socr.ucla.edu/htmls/SOCR_Charts.html SOCR Charts] and [http://www.socr.ucla.edu/SOCR_MotionCharts/ SOCR MotionCharts] may be used to render dynamic visualizations of these data as illustrated below. [[SOCR_EduMaterials_ChartsActivities | SOCR Charts help is available here]].
+[http://www.socr.ucla.edu/htmls/SOCR_Charts.html SOCR Charts] and [http://www.socr.ucla.edu/SOCR_MotionCharts/ SOCR MotionCharts] may be used to render dynamic visualizations of these data as illustrated below. [[SOCR_EduMaterials_ChartsActivities | SOCR Charts help is available here]]. The examples shown below were generated using [http://www.socr.ucla.edu/SOCR_MotionCharts/ SOCR MotionCharts] and the following variable-property mapping: Key=ROI; X-Axis=GMV; Y-Axis=CSFV; Size=Value; Color=Group; Category=Group.
 <center>[[Image:SOCR_Data_Dinov_July2009_NI_Fig1.png|400px]]
-[[Image:SOCR_Data_Dinov_July2009_NI_Fig2.png|400px]]</center>
+[[Image:SOCR_Data_Dinov_July2009_NI_Fig2.png|100px]]</center>
 <center>[[Image:SOCR_Data_Dinov_July2009_NI_Fig3.gif]]</center>

← Older revision		Revision as of 20:46, 24 July 2009
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	===Data===		===Data===
	[http://www.socr.ucla.edu/htmls/SOCR_Charts.html SOCR Charts] and [http://www.socr.ucla.edu/SOCR_MotionCharts/ SOCR MotionCharts] may be used to render dynamic visualizations of these data as illustrated below. [[SOCR_EduMaterials_ChartsActivities \| SOCR Charts help is available here]].		[http://www.socr.ucla.edu/htmls/SOCR_Charts.html SOCR Charts] and [http://www.socr.ucla.edu/SOCR_MotionCharts/ SOCR MotionCharts] may be used to render dynamic visualizations of these data as illustrated below. [[SOCR_EduMaterials_ChartsActivities \| SOCR Charts help is available here]].
		+
		+	<center>[[Image:SOCR_Data_Dinov_July2009_NI_Fig1.png\|400px]]
		+	[[Image:SOCR_Data_Dinov_July2009_NI_Fig2.png\|400px]]</center>
		+	<center>[[Image:SOCR_Data_Dinov_July2009_NI_Fig3.gif]]</center>

← Older revision		Revision as of 20:42, 24 July 2009
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	===Data===		===Data===
		+	[http://www.socr.ucla.edu/htmls/SOCR_Charts.html SOCR Charts] and [http://www.socr.ucla.edu/SOCR_MotionCharts/ SOCR MotionCharts] may be used to render dynamic visualizations of these data as illustrated below. [[SOCR_EduMaterials_ChartsActivities \| SOCR Charts help is available here]].
		+
		+
	The Complete data set is available online in [http://socr.ucla.edu/docs/resources/SOCR_Data/AD_NC_MCI_NI_Data2009.html HTML tabular (5MB)] and [http://socr.ucla.edu/docs/resources/SOCR_Data/AD_NC_MCI_NI_Data2009.txt ASCII/TEXT (1.5MB)] formats. A small portion of the data that illustrates the complexity of this dataset is shown in the table below:		The Complete data set is available online in [http://socr.ucla.edu/docs/resources/SOCR_Data/AD_NC_MCI_NI_Data2009.html HTML tabular (5MB)] and [http://socr.ucla.edu/docs/resources/SOCR_Data/AD_NC_MCI_NI_Data2009.txt ASCII/TEXT (1.5MB)] formats. A small portion of the data that illustrates the complexity of this dataset is shown in the table below:

@@ Line 1: / Line 1: @@
 == [[SOCR_Data | SOCR Datasets]] -  Neuroimaging study of 27 Alzheimer's disease (AD) subjects, 35 normal controls (NC), and 42 mild cognitive impairment subjects (MCI) ==
-==Data Overview==
+===Data Overview===
 [[Image:SOCR_Data_Dinov_July2009_NI.png|150px|thumbnail|right| [http://socr.ucla.edu/docs/resources/SOCR_Data/AD_NC_MCI_NI_Data2009.html Neuroimaging Data] ]]
 [[SOCR_Data_July2009_ID_NI#References |This is a large neuroimaging study]] using automated volumetric data processing to obtain different shape and volume measures of local anatomy. The subject population is derived from the [http://www.loni.ucla.edu/ADNI Alzheimer's Disease Neuroimaging Initiative (ADNI) database] and includes 27 Alzheimer's disease (AD) subjects, 35 normal controls (NC), and 42 mild cognitive impairment subjects (MCI). The goals of the study were to identify associations and relationships between neuroimaging biomarkers and various subject demographics and traits.
-==Data Description==
+===Data Description===
 * Subject_ID: index of the subject in this dataset (1, 2, 3, ..., 104)
 * Group: Indicator of the subject group: Alzheimer's disease (AD), normal control (NC), or mild cognitive impairment (MCI)
@@ Line 24: / Line 24: @@
 * Value: Numerical value of the measure (above).
-==Data==
+===Data===
 [http://socr.ucla.edu/docs/resources/SOCR_Data/AD_NC_MCI_NI_Data2009.html Complete data set (5MB) is available here]. A small portion of the data that illustrates the complexity of this dataset is shown in the table below:
@@ Line 1,376: / Line 1,376: @@
 |}
-== ROIs==
+=== ROIs===
 {| class="wikitable" style="text-align:center;" border="2"
 |-
@@ Line 1,496: / Line 1,496: @@
 |}
-== References==
+=== References===
 * Dinov ID, Van Horn JD, Lozev KM, Magsipoc R, Petrosyan P, Liu Z, MacKenzie-Graha A, Eggert P, Parker DS and Toga AW (2009) Efficient, Distributed and Interactive Neuroimaging Data Analysis using the LONI Pipeline. [http://www.frontiersin.org/neuroinformatics/ Front. Neuroinform.] (2009) 3:22. [http://www.frontiersin.org/neuroinformatics/paper/10.3389/neuro.11/022.2009/ doi:10.3389/neuro.11.022.2009], published online: 20 July 2009.

@@ Line 13: / Line 13: @@
 * Age: Subject's age
 * TBV: [http://en.wikipedia.org/wiki/Brain_size Total Brain Volume] measure in ''mm<sup>3</sup>''
-* GMV: [en.wikipedia.org/wiki/Gray_matter Gray Matter] Volume in ''mm<sup>3</sup>''
+* GMV: [http://en.wikipedia.org/wiki/Gray_matter Gray Matter] Volume in ''mm<sup>3</sup>''
 * WMV: [http://en.wikipedia.org/wiki/White_matter White Matter] Volume in ''mm<sup>3</sup>''
 * CSFV: [http://en.wikipedia.org/wiki/Cerebrospinal_fluid Cerebrospinal Fluid] Volume in ''mm<su0>3</sup>''
@@ Line 23: / Line 23: @@
 ** FD: [http://www.ncbi.nlm.nih.gov/pubmed/16671080 Fractal Dimension] of the ROI
 * Value: Numerical value of the measure (above).
 ==Data==