SOCR Data N46 TBI ROI Volumes - Revision history

Dinov: /* Acute State Neuroimaging Data */

2022-09-28T15:37:52Z

‎Acute State Neuroimaging Data

Dinov: /* Demographic and Clinical Data */

2014-11-19T16:02:40Z

‎Demographic and Clinical Data

Dinov: /* Chronic State Neuroimaigng Data */

2014-11-19T15:49:55Z

‎Chronic State Neuroimaigng Data

Dinov: /* 56 ROI Nomenclature */

2014-11-19T15:47:12Z

‎56 ROI Nomenclature

Dinov: /* Dataset */

2014-11-19T15:44:45Z

‎Dataset

Dinov: /* Data Description and Variable Specification */

2014-11-19T15:40:58Z

‎Data Description and Variable Specification

Dinov: /* Data Description and Variable Specification */

2014-11-19T15:37:54Z

‎Data Description and Variable Specification

Dinov: /* Data Description and Variable Specification */

2014-11-19T15:37:25Z

‎Data Description and Variable Specification

Dinov: /* Data Overview */

2014-11-19T15:28:40Z

‎Data Overview

Dinov: /* Demographic and Clinical Data */

2014-11-19T15:25:54Z

‎Demographic and Clinical Data

@@ Line 117: / Line 117: @@
 {| class="wikitable" style="text-align:center;" border="2"
 |-
-!Acute(mm3)||TBV||GM||WM||CSF||Background||L_superior_frontal_gyrus||R_middle_frontal_gyrus||R_precuneus||cerebellum||L_angular_gyrus||R_cingulate_gyrus||L_middle_temporal_gyrus||R_lingual_gyrus||L_superior_temporal_gyrus||L_fusiform_gyrus||R_superior_parietal_gyrus||R_inferior_occipital_gyrus||L_parahippocampal_gyrus||R_caudate||L_inferior_temporal_gyrus||brainstem||L_superior_parietal_gyrus||R_precentral_gyrus||L_middle_frontal_gyrus||L_lingual_gyrus||L_postcentral_gyrus||R_inferior_temporal_gyrus||L_putamen||R_inferior_frontal_gyrus||R_insular_cortex||L_inferior_frontal_gyrus||R_supramarginal_gyrus||R_gyrus_rectus||L_inferior_occipital_gyrus||R_putamen||L_superior_occipital_gyrus||R_middle_orbitofrontal_gyrus||R_postcentral_gyrus||L_precentral_gyrus||R_lateral_orbitofrontal_gyrus||L_cingulate_gyrus||L_lateral_orbitofrontal_gyrus||R_fusiform_gyrus||L_supramarginal_gyrus||R_parahippocampal_gyrus||R_superior_frontal_gyrus||L_middle_orbitofrontal_gyrus||R_cuneus||R_superior_occipital_gyrus||L_gyrus_rectus||R_angular_gyrus||R_middle_occipital_gyrus||R_middle_temporal_gyrus||L_precuneus||L_cuneus||L_caudate||L_hippocampus||R_hippocampus||R_superior_temporal_gyrus||L_middle_occipital_gyrus||L_insular_cortex||L_Thalamus||R_Thalamus
+! ID||TBV||GM||WM||CSF||Background||L_superior_frontal_gyrus||R_middle_frontal_gyrus||R_precuneus||cerebellum||L_angular_gyrus||R_cingulate_gyrus||L_middle_temporal_gyrus||R_lingual_gyrus||L_superior_temporal_gyrus||L_fusiform_gyrus||R_superior_parietal_gyrus||R_inferior_occipital_gyrus||L_parahippocampal_gyrus||R_caudate||L_inferior_temporal_gyrus||brainstem||L_superior_parietal_gyrus||R_precentral_gyrus||L_middle_frontal_gyrus||L_lingual_gyrus||L_postcentral_gyrus||R_inferior_temporal_gyrus||L_putamen||R_inferior_frontal_gyrus||R_insular_cortex||L_inferior_frontal_gyrus||R_supramarginal_gyrus||R_gyrus_rectus||L_inferior_occipital_gyrus||R_putamen||L_superior_occipital_gyrus||R_middle_orbitofrontal_gyrus||R_postcentral_gyrus||L_precentral_gyrus||R_lateral_orbitofrontal_gyrus||L_cingulate_gyrus||L_lateral_orbitofrontal_gyrus||R_fusiform_gyrus||L_supramarginal_gyrus||R_parahippocampal_gyrus||R_superior_frontal_gyrus||L_middle_orbitofrontal_gyrus||R_cuneus||R_superior_occipital_gyrus||L_gyrus_rectus||R_angular_gyrus||R_middle_occipital_gyrus||R_middle_temporal_gyrus||L_precuneus||L_cuneus||L_caudate||L_hippocampus||R_hippocampus||R_superior_temporal_gyrus||L_middle_occipital_gyrus||L_insular_cortex||L_Thalamus||R_Thalamus
 |-
 |2||1458326||400182||737989||320155||2851490||79891||50936||13450||139564||22266||19285||27932||21430||26588||20095||32781||10580||6797||3144||20895||43711||32574||27752||60378||20586||27865||21814||1584||34150||11280||30430||11723||3896||9949||4737||10488||13021||29917||35581||4883||16271||6459||16393||10463||10392||84613||11885||7633||11540||4085||21346||34046||31597||16628||7360||1347||3445||3419||31320||24888||7203||3000||3000

@@ Line 49: / Line 49: @@
 |-
 |ID||age||sex(m0f1)||field.gcs||er.gcs||icu.gcs||worst.gcs||X6m.gose||X2013.gose||skull.fx||temp.injury||surgery||spikes.hr||min.hr||max.hr||acute.sz||late.sz||ever.sz
 |-
 |2||55||0||9||3||3||3||5||7||1||1||1||169||14||757||0||1||1
@@ Line 67: / Line 65: @@
 |-
 |11||43||0||8||7||7||7||6||7||1||0||1||8||0||72||0||0||0
 |-
 |13||21||0||12||13||9||9||7||7||1||0||1||-140||-34||19||0||1||1
@@ Line 79: / Line 75: @@
 |-
 |17||31||0||7||3||9||3||5||7||1||0||0||4||0||28||0||0||0
 |-
 |19||18||0||4||3||6||3||5||3||1||1||1||40||-37||97||0||1||1
 |-
 |20||48||0||3||8||7||3||5||7||0||0||0||119||32||-73||0||0||0
 |-
 |23||20||0||15||14||13||13||5||8||1||1||1||144||9||410||0||1||1
 |-
 |24||41||0||3||3||6||3||3||7||1||0||0||36||-8||397||0||0||0
 |-
 |27||36||0||3||3||3||3||5||6||0||0||0||58||3||664||0||1||1
 |-
 |28||83||1||14||14||9||9||5||5||0||1||1||209||42||641||1||1||1
 |-
 |32||45||0||6||6||6||6||3||6||0||0||1||105||-17||483||0||0||0
 |-
 |34||34||0||7||7||3||3||4||6||0||1||1||48||0||226||0||1||1
 |-
 |35||19||0||3||7||7||3||7||8||0||0||0||97||0||300||0||0||0
 |-
 |38||25||0||14||18||6||6||8||8||0||0||1||30||0||175||1||0||1

@@ Line 208: / Line 208: @@
 {| class="wikitable" style="text-align:center;" border="2"
 |-
+!chronic(mm3)||TBV||GM||WM||CSF||Background||L_superior_frontal_gyrus||R_middle_frontal_gyrus||R_precuneus||cerebellum||L_angular_gyrus||R_cingulate_gyrus||L_middle_temporal_gyrus||R_lingual_gyrus||L_superior_temporal_gyrus||L_fusiform_gyrus||R_superior_parietal_gyrus||R_inferior_occipital_gyrus||L_parahippocampal_gyrus||R_caudate||L_inferior_temporal_gyrus||brainstem||L_superior_parietal_gyrus||R_precentral_gyrus||L_middle_frontal_gyrus||L_lingual_gyrus||L_postcentral_gyrus||R_inferior_temporal_gyrus||L_putamen||R_inferior_frontal_gyrus||R_insular_cortex||L_inferior_frontal_gyrus||R_supramarginal_gyrus||R_gyrus_rectus||L_inferior_occipital_gyrus||R_putamen||L_superior_occipital_gyrus||R_middle_orbitofrontal_gyrus||R_postcentral_gyrus||L_precentral_gyrus||R_lateral_orbitofrontal_gyrus||L_cingulate_gyrus||L_lateral_orbitofrontal_gyrus||R_fusiform_gyrus||L_supramarginal_gyrus||R_parahippocampal_gyrus||R_superior_frontal_gyrus||L_middle_orbitofrontal_gyrus||R_cuneus||R_superior_occipital_gyrus||L_gyrus_rectus||R_angular_gyrus||R_middle_occipital_gyrus||R_middle_temporal_gyrus||L_precuneus||L_cuneus||L_caudate||L_hippocampus||R_hippocampus||R_superior_temporal_gyrus||L_middle_occipital_gyrus||L_insular_cortex||L_Thalamus||R_Thalamus
 |}</center>

@@ Line 329: / Line 329: @@
 |-
 |16||182||brainstem
 |}
 </center>

@@ Line 136: / Line 136: @@
 ===Acute State Neuroimaging Data===
 ===Chronic State Neuroimaigng Data===
 == 56 ROI Nomenclature==

@@ Line 9: / Line 9: @@
 * ID: Unique subject identifier
 * Demographic variables:
-** age
+** age: subject age at injury time
 ** sex: Males (0) and Females (1)
-* GCS
+* GCS ([https://en.wikipedia.org/wiki/Glasgow_coma_scale Glasgow Coma Scale])
 ** field.gcs
 ** er.gcs
 ** icu.gcs
 ** worst.gcs
-* GOSE
+* GOSE ([http://www.rehabmeasures.org/Lists/RehabMeasures/DispForm.aspx?ID=1096 Extended Glasgow Outcome Scale])
 ** X6m.gose
 ** X2013.gose
@@ Line 23: / Line 23: @@
 ** temp.injury
 ** surgery
-* PERSYT SPIKE DETECTION
+* PERSYT SPIKE DETECTION (EEG)
 ** spikes.hr
 ** min.hr
 ** max.hr
-* Seizures (EEG): indicators of presence or absence of seizures
+* Seizures: indicators of presence or absence of seizures
 ** acute.sz: at acute state
 ** late.sz: at chronic state
@@ Line 34: / Line 34: @@
 * Chronic: observations 6-16 months following injury
 * Neuroimaging Morphometry measures
-** Global MeasuresTBV: total intercranial volume (either at acute or chronic state)
+** Global Measures (either at acute or chronic state):
 *** GM: total Gray Matter volume
 *** WM: Total White matter volume

@@ Line 38: / Line 38: @@
 *** WM: Total White matter volume
 *** CSF: total cerebro-spinal fluid in the brain
-** [[Local Measures of 56-ROI's]]: volumes of these regions of interest (either at acute or chronic state)
+** [[SOCR_Data_N46_TBI_ROI_Volumes#56_ROI_Nomenclature|Local Measures of 56-ROI's]]: volumes of these regions of interest (either at acute or chronic state)
 ==Dataset==

@@ Line 6: / Line 6: @@
 ===Data Description and Variable Specification===
-[[SMHS_MissingData|missing data]] were imputed using R's MI package.
+[[SMHS_MissingData|Missing data]] were imputed using [http://www.jstatsoft.org/v45/i02/paper R's MI package].
 ==Dataset==

@@ Line 2: / Line 2: @@
 ==Data Overview==
-[[Image:SOCR_Data_ID_April2011_NI_Pain_Fig1.gif|350px|thumbnail|right| Neuroimaging Data ]]
+[[Image:SOCR_Data_N46_TBI_ROI_Volumes_Fig1.png|350px|thumbnail|right| TBI Brain Mapping]]
 Examine the precise nature of localized brain atrophy in Traumatic Brain Injury (TBI) using non-invasive imaging methods may provide predictive biomarkers to identify patients at risk to develop Posttraumatic Epilepsy (PTE). Automated shape and volume analysis technique can disclose the presence of focal alteration in patients’ thalami after acute Traumatic Brain Injury.
 ===Data Description and Variable Specification===
 [[SMHS_MissingData|missing data]] were imputed using R's MI package.
 ==Dataset==

@@ Line 14: / Line 14: @@
 {| class="wikitable" style="text-align:center;" border="2"
 |-
-!rowspan="2"|ID || colspan="2"|DEMOGRAPHICS ||colspan="4"|GCS||colspan="2"|GOSE||colspan="3"|INJURY_CHARACTERISTICS||colspan="3"|PERSYT_SPIKE_DETECTION||colspan="3"|SEIZURES
+!ID || colspan="2"|DEMOGRAPHICS ||colspan="4"|GCS||colspan="2"|GOSE||colspan="3"|INJURY_CHARACTERISTICS||colspan="3"|PERSYT_SPIKE_DETECTION||colspan="3"|SEIZURES
 |-
-|age||sex(m0f1)||field.gcs||er.gcs||icu.gcs||worst.gcs||X6m.gose||X2013.gose||skull.fx||temp.injury||surgery||spikes.hr||min.hr||max.hr||acute.sz||late.sz||ever.sz
+|ID||age||sex(m0f1)||field.gcs||er.gcs||icu.gcs||worst.gcs||X6m.gose||X2013.gose||skull.fx||temp.injury||surgery||spikes.hr||min.hr||max.hr||acute.sz||late.sz||ever.sz
 |-
 |1||19||0||10||10||10||10||5||5||0||1||1||31||18||329||1||1||1