SOCR EduMaterials AnalysesCommandLine - Revision history

IvoDinov: /* General Usage */ added a link to the SOCR CD Download ZIP file

2010-08-27T21:27:06Z

‎General Usage: added a link to the SOCR CD Download ZIP file

2010-03-12T06:23:53Z

added references

2010-03-12T06:09:18Z

‎Specific Volumetric Analyses

2010-03-12T06:08:58Z

‎Specific Volumetric Analyses: added Kruscal-Wallis Volumetric Analysis

2010-01-31T20:59:02Z

‎Specific Volumetric Analyses: added the SOCR_EduMaterials_AnalysesCommandLineVolume2PairedSamples_Wilcoxon_RankSum

2010-01-31T19:13:36Z

‎Specific Volumetric Analyses: added a link to the new Volume2IndepSample_Wilcoxon_test

2009-06-24T21:34:53Z

‎General Usage

2009-06-24T21:34:30Z

2009-05-21T20:02:34Z

‎Specific Volumetric Analyses

2009-05-10T00:02:42Z

‎Specific Volumetric Analyses: added FDR

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 ===General Usage===
-* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
+* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/). You can also download the Complete [http://code.google.com/p/socr/downloads/detail?name=SOCR_CD.zip SOCR CD including all executables and HTML pages for offline invocation].
 * The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
 * All Input files are ASCII (see examples within each of the specific analyses).

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 * [http://www.loni.ucla.edu/twiki/bin/view/CCB/SIGPNS_052109 Example uses of these tools as part of computational neuroimaging pipeline workflows].
 <hr>
 {{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLine}}

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 * [[SOCR_EduMaterials_AnalysesCommandLineFDR_Correction]]
 * [[SOCR_EduMaterials_AnalysesCommandLineVolumeKruskalWallis]]
 * [http://www.loni.ucla.edu/twiki/bin/view/CCB/SIGPNS_052109 Example uses of these tools as part of computational neuroimaging pipeline workflows].

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 * [[SOCR_EduMaterials_AnalysesCommandLineVolume2IndepSample_Wilcoxon_test]]
 * [[SOCR_EduMaterials_AnalysesCommandLineFDR_Correction]]
+* [[SOCR_EduMaterials_AnalysesCommandLineVolumeKruskalWallis]]
 * [http://www.loni.ucla.edu/twiki/bin/view/CCB/SIGPNS_052109 Example uses of these tools as part of computational neuroimaging pipeline workflows].

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 * [[SOCR_EduMaterials_AnalysesCommandLineVolumeMultipleRegression]]
 * [[SOCR_EduMaterials_AnalysesCommandLineVolume1Sample_T_test]]
 * [[SOCR_EduMaterials_AnalysesCommandLineVolume2Samples_T_test]]
 * [[SOCR_EduMaterials_AnalysesCommandLineVolume2IndepSample_Wilcoxon_test]]

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 * All Input files are ASCII (see examples within each of the specific analyses).
 * a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data).
-* When running large Java jobs on Grid architectures or when submitting jobs via ''qsub'', the following specification to request additional memory may be useful to avoid ''OutOfMemoryExceptions'': ''h_vmem=4.5G''
+* When running large Java jobs on Grid architectures or when submitting jobs via ''qsub'', the following specification to request additional memory may be useful to avoid ''OutOfMemoryExceptions'': ''h_vmem=4.5G'':
-: <code>qsub -q short.q -t 1:12 -l h_vmem=4.5G,h_stack=10M VolumeMultipleRegression_FA.tcsh</code>.
+: <code>qsub -q short.q -t 1:12 -l h_vmem=4.5G,h_stack=10M VolumeMultipleRegression_FA.tcsh</code>
 ===Analysis-specific Usage===