SOCR EduMaterials AnalysesCommandLineAnovaOneWay - Revision history

Jenny at 17:20, 2 December 2008

2008-12-02T17:20:05Z

IvoDinov: /* ANOVA - One Way Usage */ fixed line-breaks.

2008-03-20T22:39:18Z

‎ANOVA - One Way Usage: fixed line-breaks.

Teresalam: /* ANOVA - One Way Usage */

2008-03-05T23:26:57Z

‎ANOVA - One Way Usage

Teresalam: /* Example Input data files */

2008-03-05T23:15:41Z

‎Example Input data files

Teresalam: /* ANOVA - One Way Usage */

2008-03-05T23:09:57Z

‎ANOVA - One Way Usage

Teresalam: New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html ANOVA - One Way] library via shell-based command-line interface on local machines. Mo...

2008-02-13T23:33:25Z

New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html ANOVA - One Way] library via shell-based command-line interface on local machines. Mo...

New page

This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html ANOVA - One Way] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].

== Introduction ==
In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.

==General Usage==
* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
* The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
* All Input files are ASCII (see examples within each of the specific analyses).
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)

==ANOVA - One Way Usage==
* Generic Setting:
<code>
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
</code>

* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
<code>#!/bin/csh</code>

<code>date</code>

<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
stat.SOCR.analyses.command.TwoPairSignedRankCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /cxfs/ccb/CCB_SW_Tools/others/S
tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>

<code>date</code>

<code>exit</code>

==Example Input data files==
Two test datafiles are included with the SOCR analyses command-line distribution ('''rank1.txt''' and '''rank2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

<center>
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
|-
! rank1.txt
! rank2.txt
|-
| Before
| After
|-
| 27.0
| 25.0
|-
| 29.0
| 25.0
|-
| 37.0
| 27.0
|-
| 56.0
| 44.0
|-
| 46.0
| 30.0
|-
| 82.0
| 67.0
|-
| 57.0
| 53.0
|-
| 80.0
| 53.0
|-
| 61.0
| 52.0
|-
| 59.0
| 60.0
|-
| 43.0
| 28.0
|}
</center>

{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineTwoPairSignedRank}}

← Older revision		Revision as of 17:20, 2 December 2008
Line 94:		Line 94:
	</center>		</center>

−	{{translate\|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=~~SOCR_EduMaterials_AnalysesCommandLineTwoPairSignedRank~~}}	+	{{translate\|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineAnovaOneWay}}

@@ Line 23: / Line 23: @@
 <code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
+cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.AnovaOneWayCSV /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/test.txt -h</code>
 <code>date</code>

@@ Line 17: / Line 17: @@
 </code>
-* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (AnovaOneWayCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>

@@ Line 32: / Line 32: @@
 ==Example Input data files==
-Two test datafiles are included with the SOCR analyses command-line distribution ('''rank1.txt''' and '''rank2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
+One test datafile is included with the SOCR analyses command-line distribution ('''test.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
 <center>
 {| class="wikitable" style="text-align:center" border="1" cellpadding="2"
 |-
-! rank1.txt
+! test.txt
-! rank2.txt
 |-
-| Before
+| x
-| After
+| y
 |-
-| 27.0
+| 93.0
-| 25.0
+| 1
 |-
-| 29.0
+| 67.0
-| 25.0
+| 1
 |-
-| 37.0
+| 77.0
-| 27.0
+| 1
 |-
-| 56.0
+| 92.0
-| 44.0
+| 1
 |-
-| 46.0
+| 97.0
-| 30.0
+| 1
 |-
-| 82.0
+| 62.0
-| 67.0
+| 1
 |-
-| 57.0
+| 136.0
-| 53.0
+| 2
 |-
-| 80.0
+| 120.0
-| 53.0
+| 2
 |-
-| 61.0
+| 115.0
-| 52.0
+| 2
 |-
-| 59.0
+| 121.0
-| 60.0
+| 2
 |-
-| 43.0
+| 102.0
-| 28.0
+| 2
 |}
 </center>
 {{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineTwoPairSignedRank}}

@@ Line 14: / Line 14: @@
 * Generic Setting:
 <code>
-java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
+java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.AnovaOneWayCSV [data_location]/test.txt -h
 </code>
@@ Line 24: / Line 24: @@
 <code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
 cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
-stat.SOCR.analyses.command.TwoPairSignedRankCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
+stat.SOCR.analyses.command.AnovaOneWayCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
-ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /cxfs/ccb/CCB_SW_Tools/others/S
+ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/test.txt -h</code>
 <code>date</code>