SOCR EduMaterials AnalysesCommandLineDichotomousProportion - Revision history

IvoDinov: /* Dichotomous ProportionUsage */

2008-12-03T00:27:54Z

‎Dichotomous ProportionUsage

IvoDinov at 00:27, 3 December 2008

2008-12-03T00:27:26Z

Teresalam: /* Example Input data files */

2008-03-06T21:33:29Z

‎Example Input data files

Teresalam at 21:33, 6 March 2008

2008-03-06T21:33:16Z

Teresalam at 21:27, 6 March 2008

2008-03-06T21:27:49Z

Teresalam: New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Multiple Regression] library via shell-based command-line interface on local machines...

2008-03-06T21:25:23Z

New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Multiple Regression] library via shell-based command-line interface on local machines...

New page

This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Multiple Regression] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].

== Introduction ==
In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.

==General Usage==
* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
* The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
* All Input files are ASCII (see examples within each of the specific analyses).
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variable is included, 3 is set defaulted.

==Multiple Regression Usage==
* Generic Setting:
<code>
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.MultiRegressionCSV [data_location]/m.txt -h [number_of_variables] 3
</code>

* Example: Edit a new file (MultiRegressionCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
<code>#!/bin/csh</code>

<code>date</code>

<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
stat.SOCR.analyses.command.MultiRegressionCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/m.txt -h 3</code>

<code>date</code>

<code>exit</code>

==Example Input data files==
One test datafile is included with the SOCR analyses command-line distribution ('''m.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

<center>
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
|-
!
! m.txt
!
|-
| x
| y
| z
|-
| 968.0
| 158.0
| 64.0
|-
| 43.0
| 11.0
| 0.4
|-
| 588.0
| 91.0
| 12.0
|-
| 640.0
| 92.0
| 34.0
|-
| 4743.0
| 952.0
| 100.0
|-
| 566.0
| 109.0
| 17.0
|-
| 325.0
| 167.0
| 518.0
|-
| 118.0
| 30.0
| 226.0
|-
| 115.0
| 35.0
| 12524.0
|-
| 1545.0
| 298.0
| 91.0
|-
| 1302.0
| 203.0
| 68.0
|-
| 262.0
| 41.0
| 8.1
|-
| 2207.0
| 544.0
| 180.0
|-
| 1410.0
| 254.0
| 129.0
|-
| 833.0
| 150.0
| 49.0
|-
| 669.0
| 136.0
| 27.0
|-
| 911.0
| 147.0
| 76.0
|-
| 1037.0
| 146.0
| 72.0
|-
| 1196.0
| 46.0
| 31.0
|-
| 616.0
| 157.0
| 314.0
|-
| 766.0
| 255.0
| 655.0
|-
| 2120.0
| 403.0
| 137.0
|-
| 841.0
| 189.0
| 43.0
|-
| 648.0
| 85.0
| 46.0
|-
| 1289.0
| 234.0
| 63.0
|-
| 259.0
| 38.0
| 4.6
|}
</center>

{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineMultiRegression}}

@@ Line 23: / Line 23: @@
 <code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h 0.01</code>
 <code>date</code>

@@ Line 9: / Line 9: @@
 * All Input files are ASCII (see examples within each of the specific analyses).
 * a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
-* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variable is included, 0.01 is set defaulted.
+* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variables is included, 1 is set as default. Significance-level (<math>\alpha</math>) is specified last and defaulted to 0.01.
 == Dichotomous ProportionUsage==
@@ Line 17: / Line 17: @@
 </code>
-* Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
 <code>date</code>
-<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
+<code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
-stat.SOCR.analyses.command.DichotomousProportionCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
+stat.SOCR.analyses.command.DichotomousProportionCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h .0.01</code>
 <code>date</code>

@@ Line 37: / Line 37: @@
 {| class="wikitable" style="text-align:center" border="1" cellpadding="2"
 |-
 ! d.txt
 |-
 | x

@@ Line 9: / Line 9: @@
 * All Input files are ASCII (see examples within each of the specific analyses).
 * a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
-* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variable is included, 3 is set defaulted.
+* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variable is included, 0.01 is set defaulted.
 == Dichotomous ProportionUsage==
 * Generic Setting:
 <code>
-java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.MultiRegressionCSV [data_location]/m.txt -h [number_of_variables] 3
+java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV [data_location]/d.txt -h [number_of_variables] 0.01
 </code>
-* Example: Edit a new file (MultiRegressionCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
@@ Line 24: / Line 24: @@
 <code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
 cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
-stat.SOCR.analyses.command.MultiRegressionCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
+stat.SOCR.analyses.command.DichotomousProportionCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
-ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/m.txt -h 3</code>
+ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h .0.01</code>
 <code>date</code>
@@ Line 32: / Line 32: @@
 ==Example Input data files==
-One test datafile is included with the SOCR analyses command-line distribution ('''m.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
+One test datafile is included with the SOCR analyses command-line distribution ('''d.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
 <center>
@@ Line 38: / Line 38: @@
 |-
+!
-! m.txt
+! d.txt
+!
 |-
 | x
 |-
-| 968.0
+| 0
 |-
-| 43.0
+| 1
 |-
-| 588.0
+| 0
 |-
-| 640.0
+| 1
 |-
-| 4743.0
+| 1
 |-
-| 566.0
+| 1
 |-
-| 325.0
+| 0
 |-
-| 118.0
+| 0
 |-
-| 115.0
+| 0
 |-
-| 1545.0
+| 0
 |-
-| 1302.0
+| 1
 |-
-| 262.0
+| 0
 |-
-| 2207.0
+| 1
 |-
-| 1410.0
+| 0
 |}
 </center>
 {{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineDichotomousProportion}}

@@ Line 1: / Line 1: @@
-This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Multiple Regression] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
+This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html DichotomousProportion] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
 == Introduction ==
@@ Line 11: / Line 11: @@
 * Number of variables can be indicated at the end (after '''-h''' flag). If no number of variable is included, 3 is set defaulted.
-==Multiple Regression Usage==
+== Dichotomous ProportionUsage==
 * Generic Setting:
 <code>
@@ Line 151: / Line 151: @@
 </center>
-{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineMultiRegression}}
+{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineDichotomousProportion}}