SOCR EduMaterials AnalysesCommandLineKolmogorovSmirnoff - Revision history

WikiSysop: /* Introduction */

2014-03-06T16:12:20Z

‎Introduction

WikiSysop: /* General Usage */

2014-03-06T16:11:47Z

‎General Usage

IvoDinov at 00:39, 3 December 2008

2008-12-03T00:39:07Z

Jenny at 17:22, 2 December 2008

2008-12-02T17:22:44Z

Jenny: New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html KolmogorovSmirnoff] library via shell-based command-line interface on local machines....

2008-12-02T17:22:07Z

New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html KolmogorovSmirnoff] library via shell-based command-line interface on local machines....

New page

This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html KolmogorovSmirnoff] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].

== Introduction ==
In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.

==General Usage==
* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
* The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
* All Input files are ASCII (see examples within each of the specific analyses).
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)

==Fliger-Killeen Usage==
* Generic Setting:
<code>
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar:/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV [data_location]/FK.txt -h
</code>

* Example: Edit a new file (KolmogorovSmirnoffCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
<code>#!/bin/csh</code>

<code>date</code>

<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/KS.txt -h</code>

<code>date</code>

<code>exit</code>

==Example Input data files==
One test datafile is included with the SOCR analyses command-line distribution ('''KS.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

<center>
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
|-
! KS.txt
|
|-
| A
| B
|-
| 0.08||0.11
|-
| 0.1||0.18
|-
| 0.15||0.23
|-
| 0.17||0.51
|-
| 0.24||1.19
|-
| 0.34||1.3
|-
| 0.38||1.32
|-
| 0.42||1.73
|-
| 0.49||2.06
|-
| 0.5||2.16
|-
| 0.7||2.37
|-
| 0.94||2.91
|-
| 0.95||4.5
|-
| 1.26||4.51
|-
| 1.37||4.66
|-
| 1.55||14.68
|-
| 1.75||14.82
|-
| 3.2||27.44
|-
| 6.98||39.41
|-
| 50.57||41.04
|}
</center>

{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineKolmogorovSmirnoff}}

@@ Line 2: / Line 2: @@
 == Introduction ==
-In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.
+In addition to the graphical user interfaces, via a web-browser, all [http://socr.umich.edu/html/ana/ SOCR Analyses] allow command-line shell execution on local systems.
 ==General Usage==

@@ Line 5: / Line 5: @@
 ==General Usage==
-* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
+* Get the latest SOCR JAR files from the SOCR page (http://socr.umich.edu/html/jars/).
 * The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
 * All Input files are ASCII (see examples within each of the specific analyses).
 * a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
 == Kolmogorov-Smirnoff Usage==

@@ Line 11: / Line 11: @@
-==Fliger-Killeen Usage==
+== Kolmogorov-Smirnoff Usage==
 * Generic Setting:
 <code>
@@ Line 17: / Line 17: @@
 </code>
-* Example: Edit a new file (KolmogorovSmirnoffCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (KolmogorovSmirnoffCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
 <code>date</code>
-<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
+<code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar:/
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/KS.txt -h</code>
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/KS.txt -h</code>
 <code>date</code>

@@ Line 14: / Line 14: @@
 * Generic Setting:
 <code>
-java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar:/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV [data_location]/FK.txt -h
+java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar:/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV [data_location]/KS.txt -h
 </code>