SOCR EduMaterials AnalysesCommandLineTwoIndependentWilcoxon - Revision history

IvoDinov at 00:54, 3 December 2008

2008-12-03T00:54:02Z

IvoDinov: /* Example Input data files */ clarified the issue of the "-h" header flag

2008-03-20T21:43:22Z

‎Example Input data files: clarified the issue of the "-h" header flag

Teresalam at 03:08, 4 February 2008

2008-02-04T03:08:24Z

Teresalam at 03:00, 4 February 2008

2008-02-04T03:00:03Z

Teresalam: Removing all content from page

2008-02-04T02:59:27Z

Removing all content from page

Teresalam: New page: == Introduction == In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on ...

2008-02-04T02:58:25Z

New page: == Introduction == In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on ...

New page

== Introduction ==
In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.

@@ Line 16: / Line 16: @@
 </code>
-* Example: Edit a new file (TwoIndependentWilcoxonCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (TwoIndependentWilcoxonCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
 <code>date</code>
-<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
+<code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t2.txt -h</code>
 <code>date</code>

@@ Line 32: / Line 32: @@
 ==Example Input data files==
-Two test datafiles are included with the SOCR analyses command-line distribution ('''t1.txt''' and '''t2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
+Two test datafiles are included with the SOCR analyses command-line distribution ('''t1.txt''' and '''t2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. If you do not include the "-h" flag, the program assumes there are '''no headers''' in the files and the datasets will be automatically labeled "variable 1" and "variable 2".
 <center>

@@ Line 1: / Line 1: @@
-This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Chi-Square Model-Fit SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
+This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Independent Sample Wilcoxon Rank Sum Test SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
 == Introduction ==
@@ Line 9: / Line 9: @@
 * All Input files are ASCII (see examples within each of the specific analyses).
 * a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
-==Chi-Square Goodness of Fit Model Usage==
+==Two Independent Sample Wilcoxon Rank Sum Test Usage==
 * Generic Setting:
 <code>
-java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.ChiSquareModelFitCSV [data_location]/c1.txt [data_location]/c2.txt -h [number_of_model_parameters;default_is_0]1
+java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV [data_location]/t1.txt [data_location]/t2.txt -h
 </code>
-* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (TwoIndependentWilcoxonCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
@@ Line 24: / Line 23: @@
 <code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
 cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
-stat.SOCR.analyses.command.ChiSquareModelFitCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
+stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
-ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/c1.txt /cxfs/ccb/CCB_SW_Tools/others/S
+ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t1.txt /cxfs/ccb/CCB_SW_Tools/others/S
-tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/c2.txt -h 1</code>
+tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t2.txt -h</code>
 <code>date</code>
@@ Line 33: / Line 32: @@
 ==Example Input data files==
-Two test datafiles are included with the SOCR analyses command-line distribution ('''c1.txt''' and '''c2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
+Two test datafiles are included with the SOCR analyses command-line distribution ('''t1.txt''' and '''t2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
 <center>
 {| class="wikitable" style="text-align:center" border="1" cellpadding="2"
 |-
-! c1.txt
+! t1.txt
-! c2.txt
+! t2.txt
 |-
-| OBS
+| Y1
-| EXP
+| Y2
 |-
-| 18.0
+| 57.0
-| 12.2
+| 68.0
 |-
-| 28.0
+| 63.0
-| 27.0
+| 71.0
 |-
-| 56.0
+| 66.0
-| 56.5
+| 67.0
 |-
-| 105.0
+| 60.0
-| 94.9
+| 72.0
 |-
-| 126.0
+| 58.0
-| 132.7
+| 64.0
 |-
-| 146.0
+| 64.0
-| 159.1
+| 69.0
 |-
-| 164.0
+| 62.0
-| 166.9
+| 70.0
 |-
-| 161.0
+| 65.0
-| 155.6
+| 75.0
 |-
-| 123.0
-| 130.6
+| 65.0
 |-
-| 101.0
-| 99.7
+| 73.0
 |}
 </center>
-{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineChiSquareModelFit}}
+{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineTwoIndependentWilcoxon}}

← Older revision	Revision as of 03:00, 4 February 2008
Line 1:	Line 1:
	+	This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Chi-Square Model-Fit SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine \| other SOCR Analyses command-line interfaces is available here]].

	+	== Introduction ==
	+	In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.
	+
	+	==General Usage==
	+	* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
	+	* The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
	+	* All Input files are ASCII (see examples within each of the specific analyses).
	+	* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
	+	* Number of model parameters can be indicated at the end (after '''-h''' flag). If no number of model parameter is included, 0 is set defaulted.
	+
	+	==Chi-Square Goodness of Fit Model Usage==
	+	* Generic Setting:
	+	<code>
	+	java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.ChiSquareModelFitCSV [data_location]/c1.txt [data_location]/c2.txt -h [number_of_model_parameters;default_is_0]1
	+	</code>
	+
	+	* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
	+	<code>#!/bin/csh</code>
	+
	+	<code>date</code>
	+
	+	<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
	+	cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
	+	stat.SOCR.analyses.command.ChiSquareModelFitCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
	+	ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/c1.txt /cxfs/ccb/CCB_SW_Tools/others/S
	+	tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/c2.txt -h 1</code>
	+
	+	<code>date</code>
	+
	+	<code>exit</code>
	+
	+	==Example Input data files==
	+	Two test datafiles are included with the SOCR analyses command-line distribution ('''c1.txt''' and '''c2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
	+
	+	<center>
	+	{\| class="wikitable" style="text-align:center" border="1" cellpadding="2"
	+	\|-
	+	! c1.txt
	+	! c2.txt
	+	\|-
	+	\| OBS
	+	\| EXP
	+	\|-
	+	\| 18.0
	+	\| 12.2
	+	\|-
	+	\| 28.0
	+	\| 27.0
	+	\|-
	+	\| 56.0
	+	\| 56.5
	+	\|-
	+	\| 105.0
	+	\| 94.9
	+	\|-
	+	\| 126.0
	+	\| 132.7
	+	\|-
	+	\| 146.0
	+	\| 159.1
	+	\|-
	+	\| 164.0
	+	\| 166.9
	+	\|-
	+	\| 161.0
	+	\| 155.6
	+	\|-
	+	\| 123.0
	+	\| 130.6
	+	\|-
	+	\| 101.0
	+	\| 99.7
	+	\|-
	+	\| 74.0
	+	\| 69.7
	+	\|-
	+	\| 53.0
	+	\| 45.0
	+	\|-
	+	\| 23.0
	+	\| 27.0
	+	\|-
	+	\| 15.0
	+	\| 15.1
	+	\|-
	+	\| 9.0
	+	\| 7.9
	+	\|-
	+	\| 5.0
	+	\| 7.9
	+	\|}
	+	</center>
	+
	+	{{translate\|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineChiSquareModelFit}}

← Older revision		Revision as of 02:59, 4 February 2008
Line 1:		Line 1:
−	~~== Introduction ==~~	+
−	~~In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.~~