SOCR EduMaterials AnalysesCommandLineTwoPairSignedRank - Revision history

IvoDinov at 00:57, 3 December 2008

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Teresalam: /* Two Paired Sample Signed-Rank Test (Wilcoxon) Usage */

2008-03-05T23:30:26Z

‎Two Paired Sample Signed-Rank Test (Wilcoxon) Usage

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Teresalam at 03:59, 4 February 2008

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Teresalam: New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based ...

2008-02-04T03:58:08Z

New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based ...

New page

This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].

== Introduction ==
In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.

==General Usage==
* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
* The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
* All Input files are ASCII (see examples within each of the specific analyses).
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)

==Chi-Square Goodness of Fit Model Usage==
* Generic Setting:
<code>
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
</code>

* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
<code>#!/bin/csh</code>

<code>date</code>

<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
stat.SOCR.analyses.command.TwoPairSignedRankCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /cxfs/ccb/CCB_SW_Tools/others/S
tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>

<code>date</code>

<code>exit</code>

==Example Input data files==
Two test datafiles are included with the SOCR analyses command-line distribution ('''rank1.txt''' and '''rank2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

<center>
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
|-
! rank1.txt
! rank2.txt
|-
| Before
| After
|-
| 27.0
| 25.0
|-
| 29.0
| 25.0
|-
| 37.0
| 27.0
|-
| 56.0
| 44.0
|-
| 46.0
| 30.0
|-
| 82.0
| 67.0
|-
| 57.0
| 53.0
|-
| 80.0
| 53.0
|-
| 61.0
| 52.0
|-
| 59.0
| 60.0
|-
| 43.0
| 28.0
|}
</center>

{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineTwoPairSignedRank}}

@@ Line 1: / Line 1: @@
-This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html ANOVA - One Way SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
+This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
 == Introduction ==
@@ Line 11: / Line 11: @@
-==ANOVA - One Way Usage==
+==Two Paired Sample Signed-Rank Test (Wilcoxon) Usage==
 * Generic Setting:
 <code>

@@ Line 1: / Line 1: @@
-This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
+This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html ANOVA - One Way SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
 == Introduction ==
@@ Line 11: / Line 11: @@
-==Two Paired Sample Signed-Rank Test (Wilcoxon) Usage==
+==ANOVA - One Way Usage==
 * Generic Setting:
 <code>

@@ Line 22: / Line 22: @@
 <code>date</code>
-<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
+<code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>
 <code>date</code>

@@ Line 17: / Line 17: @@
 </code>
-* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (TwoPairSignedRankCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>

@@ Line 1: / Line 1: @@
-This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html One Sample T Test SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
+This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
 == Introduction ==
@@ Line 11: / Line 11: @@
-==One Sample T Test Usage==
+==Two Paired Sample Signed-Rank Test (Wilcoxon) Usage==
 * Generic Setting:
 <code>
-java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.OneTCSV [data_location]/rank1.txt [data_location]/1T.txt -h 5
+java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
 </code>
-* Example: Edit a new file (OneTCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
@@ Line 26: / Line 26: @@
 stat.SOCR.analyses.command.TwoPairSignedRankCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
 ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /cxfs/ccb/CCB_SW_Tools/others/S
-tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/1T.txt -h</code>
+tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>
 <code>date</code>
@@ Line 33: / Line 33: @@
 ==Example Input data files==
-Two test datafiles are included with the SOCR analyses command-line distribution ('''1T.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
+Two test datafiles are included with the SOCR analyses command-line distribution ('''rank1.txt''' and '''rank2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
 <center>
 {| class="wikitable" style="text-align:center" border="1" cellpadding="2"
 |-
-! 1T.txt
+! rank1.txt
-! 1T.txt
+! rank2.txt
 |-
 | Before