SOCR EduMaterials AnalysesCommandLineTwoPairedSignedTest - Revision history

IvoDinov at 00:55, 3 December 2008

2008-12-03T00:55:12Z

Jenny at 20:19, 2 December 2008

2008-12-02T20:19:26Z

Teresalam: /* Two Paired Sample Signed Test Usage */

2008-03-05T23:29:41Z

‎Two Paired Sample Signed Test Usage

Teresalam: New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed Test SOCR Analyses] library via shell-based command-line int...

2008-02-13T23:24:59Z

New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed Test SOCR Analyses] library via shell-based command-line int...

New page

This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed Test SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].

== Introduction ==
In addition to the graphical user interfaces, via a web-browser, all [http://socr.ucla.edu/htmls/SOCR_Analyses.html SOCR Analyses] allow command-line shell execution on local systems.

==General Usage==
* Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
* The command-line interface to SOCR Analyses generally uses '''EXAMPLE 1''' from the list of example data files for the corresponding analysis.
* All Input files are ASCII (see examples within each of the specific analyses).
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)

==Two Paired Sample Signed Test Usage==
* Generic Setting:
<code>
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
</code>

* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
<code>#!/bin/csh</code>

<code>date</code>

<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
stat.SOCR.analyses.command.TwoPairSignedRankCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /cxfs/ccb/CCB_SW_Tools/others/S
tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>

<code>date</code>

<code>exit</code>

==Example Input data files==
Two test datafiles are included with the SOCR analyses command-line distribution ('''rank1.txt''' and '''rank2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

<center>
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
|-
! rank1.txt
! rank2.txt
|-
| Before
| After
|-
| 27.0
| 25.0
|-
| 29.0
| 25.0
|-
| 37.0
| 27.0
|-
| 56.0
| 44.0
|-
| 46.0
| 30.0
|-
| 82.0
| 67.0
|-
| 57.0
| 53.0
|-
| 80.0
| 53.0
|-
| 61.0
| 52.0
|-
| 59.0
| 60.0
|-
| 43.0
| 28.0
|}
</center>

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← Older revision		Revision as of 20:19, 2 December 2008
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−	{{translate\|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=~~SOCR_EduMaterials_AnalysesCommandLineTwoPairSignedRank~~}}	+	{{translate\|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineTwoPairedSignedTest}}

@@ Line 17: / Line 17: @@
 </code>
-* Example: Edit a new file (TwoPairedSignedTestCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (TwoPairedSignedTestCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
 <code>date</code>
-<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
+<code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
-cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
+ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairedSignedTestCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>
 <code>date</code>

@@ Line 14: / Line 14: @@
 * Generic Setting:
 <code>
-java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
+java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairedSignedTestCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
 </code>
-* Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
+* Example: Edit a new file (TwoPairedSignedTestCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
 <code>#!/bin/csh</code>
@@ Line 24: / Line 24: @@
 <code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
 cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
-stat.SOCR.analyses.command.TwoPairSignedRankCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
+stat.SOCR.analyses.command.TwoPairedSignedTestCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
 ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /cxfs/ccb/CCB_SW_Tools/others/S
 tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code>