Difference between revisions of "SOCR News IBRO INSF Malaysia 2017"

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=== Logistics ===
 
=== Logistics ===
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* IBRO-APRC School on Neuroinformatics and Brain Connectivity Analysis 2017 Kuala Lumpur,  Malaysia
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* Dates: Sunday, August 06, 2017 09:00 PM -- Saturday, August 19, 2017 05:00 AM
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* Location: [http://cape.utp.edu.my/contact-us/ Centre For Advanced And Professional Education (CAPE), Menara Kembar Bank Rakyat]
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* [https://www.trelliscience.com/#/group-home/1576 IBRO/INCF 2017 Summer School Trellis Forum] (protected)
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Prof. Dinov's lectures are listed below.
  
 
===Aug 10, 2017 (Statistical Computing) ===
 
===Aug 10, 2017 (Statistical Computing) ===
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* [http://DSPA.predictive.space Data Science and Predictive Analytics]  
 
* [http://DSPA.predictive.space Data Science and Predictive Analytics]  
 
** [http://www.socr.umich.edu/people/dinov/2017/Spring/DSPA_HS650/notes/00_Motivation.html Motivation]
 
** [http://www.socr.umich.edu/people/dinov/2017/Spring/DSPA_HS650/notes/00_Motivation.html Motivation]
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* [http://pipeline.loni.usc.eduPipeline Environment]  
 
* [http://pipeline.loni.usc.eduPipeline Environment]  
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* [Pipeline Client GUI – data, modules and workflow objects
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* [http://pipeline.loni.usc.edu/learn/user-guide/ Pipeline Client GUI] – data, modules and workflow objects
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* [Module definition (http://pipeline.loni.usc.edu/learn/user-guide/creating-modules/#Simple%20modules) and workflow construction (http://pipeline.loni.usc.edu/learn/user-guide/building-a-workflow/#Building%20a%20workflow)
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* [http://pipeline.loni.usc.edu/learn/user-guide/creating-modules/#Simple%20modules Module definition] and [http://pipeline.loni.usc.edu/learn/user-guide/building-a-workflow/#Building%20a%20workflow workflow construction]
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* [Pipeline workflows documentation: https://wiki.loni.usc.edu/index.php/Main_Page
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* [https://wiki.loni.usc.edu/index.php/Main_PagePipeline workflows documentation]
−
* [Pipeline Workflow Library: http://pipeline.loni.usc.edu/explore/library-navigator/
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* [http://pipeline.loni.usc.edu/explore/library-navigator/ Pipeline Workflow Library]
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* [Pipeline workflow miner: http://pipeline.loni.usc.edu/files/miner/  
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* [http://pipeline.loni.usc.edu/files/miner/ Pipeline workflow miner]
−
* [Case-studies
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* Case-studies
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** [Global Shape Analysis (GSA)
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** [https://wiki.loni.usc.edu/index.php/Global_Shape_Analysis_(GSA)_Workflow Global Shape Analysis (GSA)]
 
*** Simple 3 cohort study of dementia
 
*** Simple 3 cohort study of dementia
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*** /ifs/loni/ccb/collabs/2017/INCF_IBRO_SummerSchool
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*** ''/ifs/loni/ccb/collabs/2017/INCF_IBRO_SummerSchool''
 
*** GSA workflow (ADNI_11AD_11_MCI_11HC_CaseStudy_DM.csv)
 
*** GSA workflow (ADNI_11AD_11_MCI_11HC_CaseStudy_DM.csv)
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* [ https://wiki.loni.usc.edu/index.php/Global_Shape_Analysis_(GSA)_Workflow
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* [https://wiki.loni.usc.edu/index.php/Global_Shape_Analysis_(GSA)_Workflow GSA Doc]
−
* [http://bit.ly/1Djhihs  
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* [http://bit.ly/1Djhihs GSA Try-It-Now], Try-It Now server; Cranium -> LONI -> Global Shape Analysis - Two Groups (Complete) workflow
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** Try-It Now server; Cranium -> LONI -> Global Shape Analysis - Two Groups (Complete) workflow
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* [https://wiki.loni.usc.edu/index.php/MDT_Atlasing_Workflow Minimum deformation template (MDT)]
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* Minimum deformation template (MDT): https://wiki.loni.usc.edu/index.php/MDT_Atlasing_Workflow
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* [http://pipeline.loni.usc.edu/explore/library-navigator/ Tensor-Based Morphometry (TBM)]
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* Tensor-Based Morphometry (TBM): http://pipeline.loni.usc.edu/explore/library-navigator/  
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* [http://pipeline.loni.usc.edu/explore/library-navigator/ PLINK Association]
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* PLINK Association: http://pipeline.loni.usc.edu/explore/library-navigator/
 
  
 
===Aug 15-16, 2017 3<sup>rd</sup> Malaysia Telemedicine Conference (2017)===
 
===Aug 15-16, 2017 3<sup>rd</sup> Malaysia Telemedicine Conference (2017)===
−
The theme of the [https://www.facebook.com/Malaysia-Telemedicine-Conference-787730134636385/ 2017 Malaysia Telemedicine Conference is Healthcare for Tomorrow - The Disruptions Begins]. Dr. Dinov's Keynote Presentation, ''Predictive Data Analytics'', Tuesday, 15 August 2017 at 9.00-9.45 AM, Sunway Medical Centre, Hospital Pusat Perubatan Sunway, 5, Jalan Lagoon Selatan, Bandar Sunway, 47500 Petaling Jaya, Selangor
+
The theme of the [https://www.facebook.com/Malaysia-Telemedicine-Conference-787730134636385/ 2017 Malaysia Telemedicine Conference is Healthcare for Tomorrow - The Disruptions Begins]. Prof. Dinov's Keynote Presentation, ''Predictive Data Analytics'', Tuesday, 15 August 2017 at 9.00-9.45 AM, Sunway Medical Centre, Hospital Pusat Perubatan Sunway, 5, Jalan Lagoon Selatan, Bandar Sunway, 47500 Petaling Jaya, Selangor
  
 
* [http://socr.umich.edu/docs/uploads/Dinov_PredictiveDataAnalytics_2017_MalaysiaTelemedicine.pdf Lecture notes (PDF)]  
 
* [http://socr.umich.edu/docs/uploads/Dinov_PredictiveDataAnalytics_2017_MalaysiaTelemedicine.pdf Lecture notes (PDF)]  
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=== Aug 18, 2017 (Neuroimaging-genetics)===
 
=== Aug 18, 2017 (Neuroimaging-genetics)===
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* Predictive Big Data Analytics (PBDA/PD): https://github.com/SOCR/PBDA  
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* [https://github.com/SOCR/PBDA Predictive Big Data Analytics (PBDA/PD)]
 
* PLINK association workflow
 
* PLINK association workflow
 
** https://wiki.loni.usc.edu/index.php/PLINK_GWAS_Workflows
 
** https://wiki.loni.usc.edu/index.php/PLINK_GWAS_Workflows
 
** http://bit.ly/1BuiI5j  
 
** http://bit.ly/1BuiI5j  
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* Pipeline bioinformatics and Genomics computing pipeline workflows https://wiki.loni.usc.edu/index.php/LONI_Pipeline_Genomics_and_Informatics_Workflow_Solutions  
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* [https://wiki.loni.usc.edu/index.php/LONI_Pipeline_Genomics_and_Informatics_Workflow_Solutions   Pipeline bioinformatics and Genomics computing pipeline workflows]
 
* Examples of published studies
 
* Examples of published studies
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** Moon, S., Dinov, ID, Kim, J, Zamanyan, A, Hobel, S, Thompson, PM, Toga, AW (2015) Structural Neuroimaging Genetics Interactions in Alzheimer's Disease. Journal of Alzheimer's Disease, 48(4):1051-63, doi: 10.3233/JAD-150335 (PMID: 26444770)
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** Moon, S., Dinov, ID, Kim, J, Zamanyan, A, Hobel, S, Thompson, PM, Toga, AW (2015) [http://dx.doi.org/10.3233/JAD-150335 Structural Neuroimaging Genetics Interactions in Alzheimer's Disease]. Journal of Alzheimer's Disease, 48(4):1051-63, doi: 10.3233/JAD-150335 (PMID: 26444770)
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** Moon, SW, Dinov, ID, Hobel, S, Zamanyan, A, Choi, YC, Thompson, PM, Toga, AW and Alzheimer's Disease Neuroimaging Initiative (ADNI) (2015) Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment. Journal of Neuroimaging, 25(5):728–737,. DOI: 10.1111/jon.12252
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** Moon, SW, Dinov, ID, Hobel, S, Zamanyan, A, Choi, YC, Thompson, PM, Toga, AW and Alzheimer's Disease Neuroimaging Initiative (ADNI) (2015) [http://dx.doi.org/10.1111/jon.12252 Structural Brain Changes in Early-Onset Alzheimer's Disease Subjects Using the LONI Pipeline Environment]. Journal of Neuroimaging, 25(5):728–737,. DOI: 10.1111/jon.12252
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** Moon, SW, Dinov ID, Zamanyan, A, Shi, R, Genco, A, Hobel, S, Thompson, PM, Toga, AW and Alzheimer's Disease Neuroimaging Initiative (ADNI) (2015) Gene Interactions and Structural Brain Change in Early-Onset Alzheimer's Disease Subjects Using the Pipeline Environment . Psychiatry Investigation, 12(1):125-135. DOI: 10.4306/pi.2015.12.1.125
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** Moon, SW, Dinov ID, Zamanyan, A, Shi, R, Genco, A, Hobel, S, Thompson, PM, Toga, AW and Alzheimer's Disease Neuroimaging Initiative (ADNI) (2015) [http://dx.doi.org/10.4306/pi.2015.12.1.125 Gene Interactions and Structural Brain Change in Early-Onset Alzheimer's Disease Subjects Using the Pipeline Environment]. Psychiatry Investigation, 12(1):125-135. DOI: 10.4306/pi.2015.12.1.125
  
 
<hr>
 
<hr>

Revision as of 17:01, 30 July 2017

SOCR Events - INCF/IBRO 2017 Neuroscience Summer School

Logistics

Prof. Dinov's lectures are listed below.

Aug 10, 2017 (Statistical Computing)

Aug 11, 2017 (High Throughput Processing of Big Neuroscience Data)

Aug 15-16, 2017 3rd Malaysia Telemedicine Conference (2017)

The theme of the 2017 Malaysia Telemedicine Conference is Healthcare for Tomorrow - The Disruptions Begins. Prof. Dinov's Keynote Presentation, Predictive Data Analytics, Tuesday, 15 August 2017 at 9.00-9.45 AM, Sunway Medical Centre, Hospital Pusat Perubatan Sunway, 5, Jalan Lagoon Selatan, Bandar Sunway, 47500 Petaling Jaya, Selangor

  • Lecture notes (PDF)
  • Outline
    • Driving biomedical problems and motivational health challenges
      • Neurodegeneration
      • Pheno-Geno-Enviro
    • Common Characteristics of Big (Biomedical and Health) Data
    • Data science
    • Predictive analytics
    • Case-studies
    • Tomorrow’s Healthcare: The Age of Disruptions
      • Open Problems
      • Future Healthcare Innovation & Delivery

Aug 18, 2017 (Neuroimaging-genetics)

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