Difference between revisions of "SOCR EduMaterials AnalysesCommandLineFisherExact"
| Line 1: | Line 1: | ||
| − | This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html | + | This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Fisher Exact Test] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]]. |
== Introduction == | == Introduction == | ||
| Line 11: | Line 11: | ||
* Number of variables have to be indicated at the end (after '''-h''' flag). If no number of variable is included, 5 is set defaulted. | * Number of variables have to be indicated at the end (after '''-h''' flag). If no number of variable is included, 5 is set defaulted. | ||
| − | == | + | ==Fisher Exact Test Usage== |
* Generic Setting: | * Generic Setting: | ||
<code> | <code> | ||
| − | java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command. | + | java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.FisherExactCSV [data_location]/f.txt -h [number_of_variables] 5 |
</code> | </code> | ||
| − | * Example: Edit a new file ( | + | * Example: Edit a new file (FisherExactCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script. |
<code>#!/bin/csh</code> | <code>#!/bin/csh</code> | ||
| Line 32: | Line 32: | ||
==Example Input data files== | ==Example Input data files== | ||
| − | One test datafile is included with the SOCR analyses command-line distribution (f.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. | + | One test datafile is included with the SOCR analyses command-line distribution ('''f.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. |
<center> | <center> | ||
Revision as of 15:48, 11 March 2008
This page includes the information on how to access the Fisher Exact Test library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.
Introduction
In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.
General Usage
- Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
- The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
- All Input files are ASCII (see examples within each of the specific analyses).
- a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)
- Number of variables have to be indicated at the end (after -h flag). If no number of variable is included, 5 is set defaulted.
Fisher Exact Test Usage
- Generic Setting:
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.FisherExactCSV [data_location]/f.txt -h [number_of_variables] 5
- Example: Edit a new file (FisherExactCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
#!/bin/csh
date
java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
stat.SOCR.analyses.command.TwoIndependentFriedmanCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/f.txt -h 5
date
exit
Example Input data files
One test datafile is included with the SOCR analyses command-line distribution (f.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
| f.txt | ||||
|---|---|---|---|---|
| A | B | C | D | E |
| 5.0 | 4.0 | 7.0 | 10.0 | 12.0 |
| 1.0 | 3.0 | 1.0 | 0.0 | 2.0 |
| 16.0 | 12.0 | 22.0 | 22.0 | 35.0 |
| 5.0 | 4.0 | 3.0 | 5.0 | 4.0 |
| 10.0 | 9.0 | 7.0 | 13.0 | 10.0 |
| 19.0 | 18.0 | 18.0 | 37.0 | 58.0 |
| 10.0 | 7.0 | 6.0 | 8.0 | 7.0 |
Translate this page:
