Difference between revisions of "SOCR EduMaterials AnalysesCommandLineDichotomousProportion"

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(New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Multiple Regression] library via shell-based command-line interface on local machines...)
 
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This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Multiple Regression] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
+
This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html DichotomousProportion] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]].
  
 
== Introduction ==
 
== Introduction ==
Line 9: Line 9:
 
* All Input files are ASCII (see examples within each of the specific analyses).
 
* All Input files are ASCII (see examples within each of the specific analyses).
 
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
 
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data)
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* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variable is included, 3 is set defaulted.
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* Number of variables can be indicated at the end (after '''-h''' flag). If no number of variables is included, 1 is set as default. Significance-level (<math>\alpha</math>) is specified last and defaulted to 0.01.
  
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==Multiple Regression Usage==
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== Dichotomous ProportionUsage==
 
* Generic Setting:
 
* Generic Setting:
 
<code>
 
<code>
−
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.MultiRegressionCSV [data_location]/m.txt -h [number_of_variables] 3
+
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV [data_location]/d.txt -h [number_of_variables] 0.01
 
</code>
 
</code>
  
−
* Example: Edit a new file (MultiRegressionCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
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* Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
 
<code>#!/bin/csh</code>
 
<code>#!/bin/csh</code>
  
 
<code>date</code>
 
<code>date</code>
  
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<code>java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
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<code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
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cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
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ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h 0.01</code>
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stat.SOCR.analyses.command.MultiRegressionCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
 
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ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/m.txt -h 3</code>
 
  
 
<code>date</code>
 
<code>date</code>
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==Example Input data files==
 
==Example Input data files==
−
One test datafile is included with the SOCR analyses command-line distribution ('''m.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
+
One test datafile is included with the SOCR analyses command-line distribution ('''d.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
  
 
<center>
 
<center>
 
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
 
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
 
|-
 
|-
−
!  
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! d.txt
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! m.txt
 
−
!
 
 
|-
 
|-
 
| x
 
| x
−
| y
 
−
| z
 
 
|-
 
|-
−
| 968.0
+
| 0
−
| 158.0
 
−
| 64.0
 
 
|-
 
|-
−
| 43.0
+
| 1
−
| 11.0
 
−
| 0.4
 
 
|-
 
|-
−
| 588.0
+
| 0
−
| 91.0
 
−
| 12.0
 
 
|-
 
|-
−
| 640.0
+
| 1
−
| 92.0
 
−
| 34.0
 
 
|-
 
|-
−
| 4743.0
+
| 1
−
| 952.0
 
−
| 100.0
 
 
|-
 
|-
−
| 566.0
+
| 1
−
| 109.0
 
−
| 17.0
 
 
|-
 
|-
−
| 325.0
+
| 0
−
| 167.0
 
−
| 518.0
 
 
|-
 
|-
−
| 118.0
+
| 0
−
| 30.0
 
−
| 226.0
 
 
|-
 
|-
−
| 115.0
+
| 0
−
| 35.0
 
−
| 12524.0
 
 
|-
 
|-
−
| 1545.0
+
| 0
−
| 298.0
 
−
| 91.0
 
 
|-
 
|-
−
| 1302.0
+
| 1
−
| 203.0
 
−
| 68.0
 
 
|-
 
|-
−
| 262.0
+
| 0
−
| 41.0
 
−
| 8.1
 
 
|-
 
|-
−
| 2207.0
+
| 1
−
| 544.0
 
−
| 180.0
 
 
|-
 
|-
−
| 1410.0
+
| 0
−
| 254.0
 
−
| 129.0
 
−
|-
 
−
| 833.0
 
−
| 150.0
 
−
| 49.0
 
−
|-
 
−
| 669.0
 
−
| 136.0
 
−
| 27.0
 
−
|-
 
−
| 911.0
 
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| 147.0
 
−
| 76.0
 
−
|-
 
−
| 1037.0
 
−
| 146.0
 
−
| 72.0
 
−
|-
 
−
| 1196.0
 
−
| 46.0
 
−
| 31.0
 
−
|-
 
−
| 616.0
 
−
| 157.0
 
−
| 314.0
 
−
|-
 
−
| 766.0
 
−
| 255.0
 
−
| 655.0
 
−
|-
 
−
| 2120.0
 
−
| 403.0
 
−
| 137.0
 
−
|-
 
−
| 841.0
 
−
| 189.0
 
−
| 43.0
 
−
|-
 
−
| 648.0
 
−
| 85.0
 
−
| 46.0
 
−
|-
 
−
| 1289.0
 
−
| 234.0
 
−
| 63.0
 
−
|-
 
−
| 259.0
 
−
| 38.0
 
−
| 4.6
 
 
|}
 
|}
 
</center>
 
</center>
  
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{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineMultiRegression}}
+
{{translate|pageName=http://wiki.stat.ucla.edu/socr/index.php?title=SOCR_EduMaterials_AnalysesCommandLineDichotomousProportion}}

Latest revision as of 19:27, 2 December 2008

This page includes the information on how to access the DichotomousProportion library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.

Introduction

In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.

General Usage

  • Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
  • The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
  • All Input files are ASCII (see examples within each of the specific analyses).
  • a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)
  • Number of variables can be indicated at the end (after -h flag). If no number of variables is included, 1 is set as default. Significance-level (\(\alpha\)) is specified last and defaulted to 0.01.

Dichotomous ProportionUsage

  • Generic Setting:

java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV [data_location]/d.txt -h [number_of_variables] 0.01

  • Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.

#!/bin/csh

date

java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h 0.01

date

exit

Example Input data files

One test datafile is included with the SOCR analyses command-line distribution (d.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

d.txt
x
0
1
0
1
1
1
0
0
0
0
1
0
1
0

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