Difference between revisions of "SOCR EduMaterials AnalysesCommandLineTwoPairSignedRank"
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| − | This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html | + | This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses] library via shell-based command-line interface on local machines. More information about [[SOCR_EduMaterials_AnalysesCommandLine | other SOCR Analyses command-line interfaces is available here]]. |
== Introduction == | == Introduction == | ||
| Line 11: | Line 11: | ||
| − | == | + | ==Two Paired Sample Signed-Rank Test (Wilcoxon) Usage== |
* Generic Setting: | * Generic Setting: | ||
<code> | <code> | ||
| − | java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command. | + | java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h |
</code> | </code> | ||
| − | * Example: Edit a new file ( | + | * Example: Edit a new file (TwoPairSignedRankCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script. |
<code>#!/bin/csh</code> | <code>#!/bin/csh</code> | ||
<code>date</code> | <code>date</code> | ||
| − | <code>java -cp / | + | <code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ |
| − | + | ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h</code> | |
| − | stat.SOCR.analyses.command.TwoPairSignedRankCSV / | ||
| − | |||
| − | |||
<code>date</code> | <code>date</code> | ||
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==Example Input data files== | ==Example Input data files== | ||
| − | Two test datafiles are included with the SOCR analyses command-line distribution (''' | + | Two test datafiles are included with the SOCR analyses command-line distribution ('''rank1.txt''' and '''rank2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. |
<center> | <center> | ||
{| class="wikitable" style="text-align:center" border="1" cellpadding="2" | {| class="wikitable" style="text-align:center" border="1" cellpadding="2" | ||
|- | |- | ||
| − | ! | + | ! rank1.txt |
| − | ! | + | ! rank2.txt |
|- | |- | ||
| Before | | Before | ||
Latest revision as of 19:57, 2 December 2008
This page includes the information on how to access the Two Paired Sample Signed-Rank Test (Wilcoxon) SOCR Analyses library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.
Contents
Introduction
In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.
General Usage
- Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
- The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
- All Input files are ASCII (see examples within each of the specific analyses).
- a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)
Two Paired Sample Signed-Rank Test (Wilcoxon) Usage
- Generic Setting:
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV [data_location]/rank1.txt [data_location]/rank2.txt -h
- Example: Edit a new file (TwoPairSignedRankCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
#!/bin/csh
date
java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoPairSignedRankCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/rank2.txt -h
date
exit
Example Input data files
Two test datafiles are included with the SOCR analyses command-line distribution (rank1.txt and rank2.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
| rank1.txt | rank2.txt |
|---|---|
| Before | After |
| 27.0 | 25.0 |
| 29.0 | 25.0 |
| 37.0 | 27.0 |
| 56.0 | 44.0 |
| 46.0 | 30.0 |
| 82.0 | 67.0 |
| 57.0 | 53.0 |
| 80.0 | 53.0 |
| 61.0 | 52.0 |
| 59.0 | 60.0 |
| 43.0 | 28.0 |
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