Difference between revisions of "SOCR EduMaterials AnalysesCommandLineTwoIndependentWilcoxon"
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| − | * Example: Edit a new file (TwoIndependentWilcoxonCSV.csh) using any editor and paste this inside (make sure the file has executable | + | * Example: Edit a new file (TwoIndependentWilcoxonCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script. |
<code>#!/bin/csh</code> | <code>#!/bin/csh</code> | ||
<code>date</code> | <code>date</code> | ||
| − | <code>java -cp / | + | <code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ |
| − | + | ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t2.txt -h</code> | |
| − | stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV / | ||
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==Example Input data files== | ==Example Input data files== | ||
| − | Two test datafiles are included with the SOCR analyses command-line distribution ('''t1.txt''' and '''t2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. | + | Two test datafiles are included with the SOCR analyses command-line distribution ('''t1.txt''' and '''t2.txt'''). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. If you do not include the "-h" flag, the program assumes there are '''no headers''' in the files and the datasets will be automatically labeled "variable 1" and "variable 2". |
<center> | <center> | ||
Latest revision as of 19:54, 2 December 2008
This page includes the information on how to access the Two Independent Sample Wilcoxon Rank Sum Test SOCR Analyses library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.
Contents
Introduction
In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.
General Usage
- Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
- The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
- All Input files are ASCII (see examples within each of the specific analyses).
- a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)
Two Independent Sample Wilcoxon Rank Sum Test Usage
- Generic Setting:
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV [data_location]/t1.txt [data_location]/t2.txt -h
- Example: Edit a new file (TwoIndependentWilcoxonCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
#!/bin/csh
date
java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.TwoIndependentWilcoxonCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t1.txt /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/t2.txt -h
date
exit
Example Input data files
Two test datafiles are included with the SOCR analyses command-line distribution (t1.txt and t2.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers. If you do not include the "-h" flag, the program assumes there are no headers in the files and the datasets will be automatically labeled "variable 1" and "variable 2".
| t1.txt | t2.txt |
|---|---|
| Y1 | Y2 |
| 57.0 | 68.0 |
| 63.0 | 71.0 |
| 66.0 | 67.0 |
| 60.0 | 72.0 |
| 58.0 | 64.0 |
| 64.0 | 69.0 |
| 62.0 | 70.0 |
| 65.0 | 75.0 |
| 65.0 | |
| 73.0 |
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