Difference between revisions of "SOCR Data N46 TBI ROI Volumes"
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==Data Overview== | ==Data Overview== | ||
| − | [[Image: | + | [[Image:SOCR_Data_N46_TBI_ROI_Volumes_Fig1.png|350px|thumbnail|right| TBI Brain Mapping]] |
Examine the precise nature of localized brain atrophy in Traumatic Brain Injury (TBI) using non-invasive imaging methods may provide predictive biomarkers to identify patients at risk to develop Posttraumatic Epilepsy (PTE). Automated shape and volume analysis technique can disclose the presence of focal alteration in patients’ thalami after acute Traumatic Brain Injury. | Examine the precise nature of localized brain atrophy in Traumatic Brain Injury (TBI) using non-invasive imaging methods may provide predictive biomarkers to identify patients at risk to develop Posttraumatic Epilepsy (PTE). Automated shape and volume analysis technique can disclose the presence of focal alteration in patients’ thalami after acute Traumatic Brain Injury. | ||
===Data Description and Variable Specification=== | ===Data Description and Variable Specification=== | ||
[[SMHS_MissingData|missing data]] were imputed using R's MI package. | [[SMHS_MissingData|missing data]] were imputed using R's MI package. | ||
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==Dataset== | ==Dataset== | ||
Revision as of 10:28, 19 November 2014
Contents
SOCR Datasets - Acute and Chronic Traumatic Brain Injury (TBI) Neuroimaging study
Data Overview
Examine the precise nature of localized brain atrophy in Traumatic Brain Injury (TBI) using non-invasive imaging methods may provide predictive biomarkers to identify patients at risk to develop Posttraumatic Epilepsy (PTE). Automated shape and volume analysis technique can disclose the presence of focal alteration in patients’ thalami after acute Traumatic Brain Injury.
Data Description and Variable Specification
missing data were imputed using R's MI package.
Dataset
Demographic and Clinical Data
| ID | DEMOGRAPHICS | GCS | GOSE | INJURY_CHARACTERISTICS | PERSYT_SPIKE_DETECTION | SEIZURES | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | age | sex(m0f1) | field.gcs | er.gcs | icu.gcs | worst.gcs | X6m.gose | X2013.gose | skull.fx | temp.injury | surgery | spikes.hr | min.hr | max.hr | acute.sz | late.sz | ever.sz |
| 1 | 19 | 0 | 10 | 10 | 10 | 10 | 5 | 5 | 0 | 1 | 1 | 31 | 18 | 329 | 1 | 1 | 1 |
| 2 | 55 | 0 | 9 | 3 | 3 | 3 | 5 | 7 | 1 | 1 | 1 | 169 | 14 | 757 | 0 | 1 | 1 |
| 3 | 24 | 0 | 12 | 12 | 8 | 8 | 7 | 7 | 1 | 0 | 0 | 37 | 0 | 351 | 0 | 0 | 0 |
| 4 | 57 | 1 | 4 | 4 | 6 | 4 | 3 | 3 | 1 | 1 | 1 | 4 | 0 | 59 | 0 | 0 | 0 |
| 5 | 54 | 1 | 14 | 11 | 8 | 8 | 5 | 7 | 0 | 1 | 1 | 55 | 0 | 284 | 0 | 0 | 0 |
| 7 | 21 | 0 | 3 | 3 | 6 | 3 | 3 | 3 | 1 | 0 | 1 | 98 | 0 | 39 | 0 | 0 | 0 |
| 9 | 30 | 0 | 3 | 9 | 3 | 3 | 3 | 5 | 1 | 1 | 1 | 44 | 0 | 367 | 0 | 1 | 1 |
| 10 | 38 | 0 | 3 | 6 | 6 | 3 | 3 | 3 | 1 | 1 | 1 | 46 | 4 | 107 | 0 | 1 | 1 |
| 11 | 43 | 0 | 8 | 7 | 7 | 7 | 6 | 7 | 1 | 0 | 1 | 8 | 0 | 72 | 0 | 0 | 0 |
| 12 | 40 | 0 | 12 | 14 | 14 | 12 | 7 | 8 | 0 | 1 | 1 | 27 | 0 | 125 | 0 | 0 | 0 |
| 13 | 21 | 0 | 12 | 13 | 9 | 9 | 7 | 7 | 1 | 0 | 1 | -140 | -34 | 19 | 0 | 1 | 1 |
| 14 | 35 | 1 | 6 | 5 | 6 | 5 | 5 | 7 | 1 | 1 | 0 | 65 | 0 | 655 | 1 | 1 | 1 |
| 15 | 59 | 0 | 14 | 14 | 0 | 0 | 8 | 8 | 1 | 1 | 0 | 104 | 29 | 719 | 0 | 0 | 0 |
| 16 | 32 | 0 | 5 | 6 | 3 | 3 | 4 | 5 | 1 | 0 | 0 | 99 | -17 | 351 | 0 | 0 | 0 |
| 17 | 31 | 0 | 7 | 3 | 9 | 3 | 5 | 7 | 1 | 0 | 0 | 4 | 0 | 28 | 0 | 0 | 0 |
| 18 | 57 | 0 | 4 | 3 | 7 | 3 | 3 | 3 | 0 | 1 | 1 | -150 | -30 | -303 | 0 | 1 | 1 |
| 19 | 18 | 0 | 4 | 3 | 6 | 3 | 5 | 3 | 1 | 1 | 1 | 40 | -37 | 97 | 0 | 1 | 1 |
| 20 | 48 | 0 | 3 | 8 | 7 | 3 | 5 | 7 | 0 | 0 | 0 | 119 | 32 | -73 | 0 | 0 | 0 |
| 22 | 22 | 0 | 3 | 3 | 3 | 3 | 2 | 2 | 1 | 1 | 1 | 10 | 0 | 80 | 0 | 1 | 1 |
| 23 | 20 | 0 | 15 | 14 | 13 | 13 | 5 | 8 | 1 | 1 | 1 | 144 | 9 | 410 | 0 | 1 | 1 |
| 24 | 41 | 0 | 3 | 3 | 6 | 3 | 3 | 7 | 1 | 0 | 0 | 36 | -8 | 397 | 0 | 0 | 0 |
| 25 | 27 | 0 | 15 | 13 | 6 | 6 | 6 | 7 | 1 | 0 | 1 | 90 | -6 | 290 | 0 | 0 | 0 |
| 26 | 23 | 0 | 14 | 14 | 7 | 7 | 4 | 7 | 1 | 1 | 1 | 46 | -13 | 92 | 0 | 0 | 0 |
| 27 | 36 | 0 | 3 | 3 | 3 | 3 | 5 | 6 | 0 | 0 | 0 | 58 | 3 | 664 | 0 | 1 | 1 |
| 28 | 83 | 1 | 14 | 14 | 9 | 9 | 5 | 5 | 0 | 1 | 1 | 209 | 42 | 641 | 1 | 1 | 1 |
| 29 | 26 | 0 | 5 | 7 | 5 | 5 | 6 | 7 | 0 | 1 | 0 | -13 | -15 | 152 | 0 | 0 | 0 |
| 31 | 23 | 0 | 12 | 13 | 13 | 12 | 3 | 7 | 1 | 0 | 1 | 75 | 13 | 155 | 0 | 0 | 0 |
| 32 | 45 | 0 | 6 | 6 | 6 | 6 | 3 | 6 | 0 | 0 | 1 | 105 | -17 | 483 | 0 | 0 | 0 |
| 33 | 18 | 0 | 8 | 8 | 7 | 7 | 7 | 7 | 0 | 0 | 0 | 7 | 0 | 20 | 0 | 1 | 1 |
| 34 | 34 | 0 | 7 | 7 | 3 | 3 | 4 | 6 | 0 | 1 | 1 | 48 | 0 | 226 | 0 | 1 | 1 |
| 35 | 19 | 0 | 3 | 7 | 7 | 3 | 7 | 8 | 0 | 0 | 0 | 97 | 0 | 300 | 0 | 0 | 0 |
| 36 | 77 | 1 | 3 | 6 | 3 | 3 | 3 | 3 | 1 | 1 | 0 | 7 | 0 | 31 | 0 | 1 | 1 |
| 37 | 75 | 0 | 14 | 14 | 12 | 7 | 5 | 8 | 1 | 0 | 0 | 6 | 0 | 42 | 0 | 1 | 1 |
| 38 | 25 | 0 | 14 | 18 | 6 | 6 | 8 | 8 | 0 | 0 | 1 | 30 | 0 | 175 | 1 | 0 | 1 |
| 39 | 62 | 1 | 12 | 8 | 8 | 8 | 3 | 3 | 0 | 1 | 1 | 6 | 0 | 33 | 0 | 1 | 1 |
| 40 | 41 | 0 | 7 | 3 | 7 | 3 | 5 | 5 | 1 | 1 | 1 | 2 | 0 | 23 | 0 | 1 | 1 |
| 41 | 60 | 0 | 3 | 12 | 7 | 3 | 3 | 5 | 1 | 1 | 0 | 4 | 0 | 12 | 0 | 1 | 1 |
| 42 | 29 | 1 | 9 | 14 | 3 | 3 | 8 | 7 | 1 | 0 | 1 | 43 | -13 | 504 | 0 | 1 | 1 |
| 43 | 48 | 0 | 12 | 12 | 11 | 11 | 6 | 7 | 0 | 0 | 1 | 5 | 0 | 43 | 0 | 0 | 0 |
| 44 | 41 | 0 | 3 | 3 | 3 | 3 | 2 | 2 | 1 | 1 | 0 | 1 | 0 | 15 | 1 | 1 | 1 |
| 45 | 34 | 0 | 6 | 8 | 3 | 3 | 3 | 3 | 1 | 1 | 1 | 214 | 3 | 824 | 1 | 1 | 1 |
| 46 | 25 | 1 | 6 | 8 | 3 | 3 | 8 | 7 | 0 | 1 | 0 | 2 | 0 | 36 | 0 | 0 | 0 |
Acute State Neuroimaging Data
Chronic State Neuroimaigng Data
56 ROI Nomenclature
| Index | Volume_Intensity down | ROI_Name |
|---|---|---|
| 0 | 0 | Background |
| 1 | 21 | L_superior_frontal_gyrus |
| 41 | 22 | R_superior_frontal_gyrus |
| 19 | 23 | L_middle_frontal_gyrus |
| 2 | 24 | R_middle_frontal_gyrus |
| 26 | 25 | L_inferior_frontal_gyrus |
| 24 | 26 | R_inferior_frontal_gyrus |
| 34 | 27 | L_precentral_gyrus |
| 18 | 28 | R_precentral_gyrus |
| 42 | 29 | L_middle_orbitofrontal_gyrus |
| 32 | 30 | R_middle_orbitofrontal_gyrus |
| 37 | 31 | L_lateral_orbitofrontal_gyrus |
| 35 | 32 | R_lateral_orbitofrontal_gyrus |
| 45 | 33 | L_gyrus_rectus |
| 28 | 34 | R_gyrus_rectus |
| 21 | 41 | L_postcentral_gyrus |
| 33 | 42 | R_postcentral_gyrus |
| 17 | 43 | L_superior_parietal_gyrus |
| 11 | 44 | R_superior_parietal_gyrus |
| 39 | 45 | L_supramarginal_gyrus |
| 27 | 46 | R_supramarginal_gyrus |
| 5 | 47 | L_angular_gyrus |
| 46 | 48 | R_angular_gyrus |
| 49 | 49 | L_precuneus |
| 3 | 50 | R_precuneus |
| 31 | 61 | L_superior_occipital_gyrus |
| 44 | 62 | R_superior_occipital_gyrus |
| 55 | 63 | L_middle_occipital_gyrus |
| 47 | 64 | R_middle_occipital_gyrus |
| 29 | 65 | L_inferior_occipital_gyrus |
| 12 | 66 | R_inferior_occipital_gyrus |
| 50 | 67 | L_cuneus |
| 43 | 68 | R_cuneus |
| 9 | 81 | L_superior_temporal_gyrus |
| 54 | 82 | R_superior_temporal_gyrus |
| 7 | 83 | L_middle_temporal_gyrus |
| 48 | 84 | R_middle_temporal_gyrus |
| 15 | 85 | L_inferior_temporal_gyrus |
| 22 | 86 | R_inferior_temporal_gyrus |
| 13 | 87 | L_parahippocampal_gyrus |
| 40 | 88 | R_parahippocampal_gyrus |
| 20 | 89 | L_lingual_gyrus |
| 8 | 90 | R_lingual_gyrus |
| 10 | 91 | L_fusiform_gyrus |
| 38 | 92 | R_fusiform_gyrus |
| 56 | 101 | L_insular_cortex |
| 25 | 102 | R_insular_cortex |
| 36 | 121 | L_cingulate_gyrus |
| 6 | 122 | R_cingulate_gyrus |
| 51 | 161 | L_caudate |
| 14 | 162 | R_caudate |
| 23 | 163 | L_putamen |
| 30 | 164 | R_putamen |
| 52 | 165 | L_hippocampus |
| 53 | 166 | R_hippocampus |
| 4 | 181 | cerebellum |
| 16 | 182 | brainstem |
References
- Dinov ID, Petrosyan P, Liu Z, Eggert P, Hobel S, Vespa P, Woo Moon S, Van Horn JD, Franco J and Toga AW. (2014) High-throughput neuroimaging-genetics computational infrastructure. Front. Neuroinform., 8:41. doi: 10.3389/fninf.2014.00041
- Vespa, PM, McArthur, DL, Xu, Y, Eliseo, M, Etchepare, M, Dinov, I, Alger, J, Glenn, TP, Hovda, D. (2010) Nonconvulsive seizures after traumatic brain injury are associated with hippocampal atrophy. Neurology, 75: 792-798.
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