CVS log for developer

• 12/10/2008 (Jenny Cui) --not in yet, having cvs problem

* update distributome package to add show_parent/show_children
* Classes changed: 
 distributome.ViewerApplet(1.6)
 distributome.data.Node(1.3)
  distributome.data.ViewerPanelInfo(1.3)

• 12/2/2008 (Jenny Cui)

* reset chiSquareStat to 0 each time, this is to fix the Chi-Square Goodness of model return wrong result after first calculation
* Classes changed: 
 analysis.gui.ChiSquareModelFit.java(1.11)

• 12/1/2008 (Jenny Cui)

*Added Fliger-Killeen and Kolmogorov-Smirnoff to analysis commandline packag, added test files and update the testing script
* Classes changed: 
 analysis.command.KolmogorovSmirnoffCSV(1.1)
 analysis.command.FlignerKilleenCSV(1.1)
 jars.CSVtesting.zip(1.3) 

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• 11/18/2008 (Jenny Cui)

*Added Distributome code
* Classes changed: 
 distributome.data.Edge.java(1.1)
 distributome.data.Node.java(1.1)
 distributome.data.Formula.java(1.1)
 distributome.data.HighLightedType.java(1.1)
 distributome.data.Reference.java(1.1)
 distributome.data.Type.java(1.1)
 distributome.data.ViewerPanelInfo.java(1.1)
 distributome.gui.LinkLabel.java(1.1)
 distributome.gui.LoadAndShowFormula.java(1.1)
 distributome.gui.SOCROptionPane.java(1.1)
 distributome.ViewerApplet.java(1.1)
 jars.implementedDistributome.txt(1.4)
 jars.SOCR_JGraph.jar(1.1)
 SOCR_Distributome.html(1.1)
build.xml(1.17)

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• 11/5/2008 (Jenny Cui)

*some gui changes to make sure the entire tabe is visiable to user
* Classes changed: 
analysis.gui.Analysis(1.41)

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• 10/27/2008 (Jenny Cui)

* Fixing summary calculation error for DotChart and Index Chart, also add SampleSize to all summary report
* Classes changed:   
  chart.data.Summary(1.9)
  chart.SuperDotChart(1.14)
  chart.SuperIndexChart(1.8)

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• 10/23/2008 (Jenny Cui)

* Adding manual kernel function to the SOCR_EM_MixtureModelChart
* Classes changed:   
  chart.demo.SOCR_EM_MixtureModelChartDemo(1.17)
  chart.gui.SOCRChartPanel(1.1)
  chart.util.CurvedGaussian(1.10)
  chart.util.CurvedGaussMixture(1.6)
  chart.util.GaussLineMixture(1.5)
  chart.util.Mixture(1.5)
  chart.util.MixtureEMExperiment(1.7)

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• 10/16/2008 (Jenny Cui)

* Adding FlignerKilleen  to Analyses, update KolmogorovSmirnoff
* Classes changed:   
  util.Utility(1.2)
  util.QSortAlgorithm(1.11)
  gui.KolmogorovSmirnoff(1.2)
  gui.Analysis(1.40)
  gui.FlignerKilleen(1.1)
  example.ExampleData(1.16)
  example.KolmogorovSmirnoffExamples(1.2)
  example.FlignerKilleenExamples(1.1)
  model.KolmogorovSmirnoff(1.2)
  model.FlignerKilleen(1.1)
  result.KolmogorovSmirnoffResult(1.2)
  result.FlignerKilleenResult(1.1)
 data.DataCase(1.8)
 data.Data(1.19)

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• 10/8/2008 (Jenny Cui)

* Adding KolmogorovSmirnoff to Analyses
* Classes changed:   
  util.Utility(1.1)
  analyses.example.ExampleData(1.15)
  analyses.example.KolmogorovSmirnoffExampleData(1.1)
  analyses.gui.KolmogorovSmirnoff (1.1)
  analyses.gui.Analysis(1.39)
  analyses.model.AnalysisType(1.12)
  analyses.model.KolmogorovSmirnof(1.1)
  analyses.result.KolmogorovSmirnofResult(1.1)

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• 8/25/2008 (Jenny Cui)

*  fixed a bug for 4 PowerTransformat charts, the problem is causing "Zero length 'data' array. at org.jfree.data.statistics.Statistics.getStdDev" error when the slider value is changed.
* Classes changed:   
   chart.demo.PowerTransformationFamilyChart.java(1.12)
   chart.demo.PowerTransformHistogramChart.java(1.12)
   chart.demo.PowerTransformQQNormalPlotChart.java(1.13)
   chart.demo.PowerTransformXYScatterChart.java(1.10)

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• 7/9/2008 (Jenny Cui)

*  fixed a bug of showing "format data error" when there are empty cell in the end of the JTable
* Classes changed:   
   chart.Chart.java(1.30)
   chart.demo.SOCR_EM_MixtureModelChartDemo.java(1.15)

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• 7/8/2008 (Jenny Cui)

*  application package updated
* Classes changed:   
   application.demo.*
   core.SOCRApplications.java (1.4)
   jars.implementedApplications.txt(1.5)
   jars.jgraph.jar(1.1)
  SOCR_Applications.html(1.2)
  build.xml(1.11)

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• 7/7/2008 (Jenny Cui)

* analysis command package updated
* Classes changed:   
   analysis.command.*

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• 6/18/2008 (Jenny Cui)

* Switch X/Y for BubbleChart
* Classes changed:   
   chart.data.Summary(1.4-1.5)
   chart.data.DataConvertor(1.11-1.12)
   chart.SuperXYZChart(1.6-1.7)
   chart.demo.BubbleChartDemo1(1.4-1.5)

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• 6/17/2008 (Jenny Cui)

* allow factor input to be string in Anova Analysis(in getDummyMatrix method)
* Classes changed:   
   util.AnalysisUtility(1.16-1.17)

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• 5/22/2008 (Jenny Cui)

* fixed bugs in Chart and Analysis package, make table headers editable after data pasting, improved data file loading
* Classes changed:   
   core.SOCRAnalyses(1.13-1.14)
    core.SOCRChart(1.15-1.16)

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• 5/9/2008 (Jenny Cui)

* Add the SOCR_Applications package
* Classes changed:   
   chart. ChartTree_dynamic(1.2-1.3)
   core.SOCRApplications(1.1)
   core.SOCRApplet2(1.2-1.3)
   core.MultiplePartsPanel(1.2-1.3)
   applications.Application(1.1)
   applications.demo.PortfolioApplication(1.1)
   applications.demo.PortfolioApplication2(1.1)
   util.FloatSlider(1.1)

   jars.implementedApplications.txt
   build.xml(1.10)
   SOCR_Applications.html

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• 4/22/2008 (Jenny Cui)

* fix for Bubble chart, handling the exception thrown when no ":" is found in the table heading
* Classes changed:   
   chart. SuperXYZChart(1.5-1.6)

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• 4/22/2008 (jenny cui)

* Added  new classes to  analyses.command pacakge
* New classes added
   jars.CSVtesting.zip  (1.1- 1.2)-- include all the input txt file and script used for testing
   analyses.command. *CVS.java

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• 4/18/2008 (Jenny Cui)

* fix for IE html table data copy/paste (IE use space while MAc use tab as cell separator)
* Classes changed:   
   core. SOCRChart(1.14-1.15)
   core. SOCRAnalyses(1.12-1.13)
 

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• 4/11/2008 (Jenny Cui)

* update the mapping panel for the dataTable changes after Pasting
* Classes changed:   
   core. SOCRChart(1.13-1.14)
   core. SOCRAnalyses(1.11-1.12)
   chart.Chart(1.28-1.29)
   analyese.gui.Analysis(1.34.1.35)

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• 4/10/2008 (Jenny Cui)

* Read in parameter from html when starting applet, this will help user to jump to the middle of the pull down list
  NOTE, this doesn't work for SOCR_Modeler because of some applet bug
* Classes changed:   
  core. SOCRApplet(1.10->1.11)
  core. SOCRApplet3(1.1->1.2)
  core. SOCRJComboBox1.1->1.2)
  SOCR_Analyses.html, SOCR_Distributions.html, SOCR_DistributionFunctors.html, SOCR_Experiments.html, SOCR_Games.html

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• 3/17/2008 (Jenny Cui)

* Add interaction for TwoWay anova
* Classes changed:   
  analyses.gui.AnovaTwoWay(1.14->1.15)
  analyses.model.AnovaOneWay(1.6-1.7)
  analyses.model.AnovaTwoWay(1.5-1.7)
  analyese.result.AnovaTwoWayResult(1.4-1.5)
  util.AnalysisUtillity(1.15-1.16)

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• 2/5/2008 (Jenny Cui)

* Fixed a bug in ConfidenceIntervalExperiment, the report of "missing intervals" was delayed by one step
* Classes changed:   
  experiment.ConfidenceIntervalExperiment(1.2->1.3)
  util.ConfidenceCanvas(1.2->1.3)

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• 1/31/2008 (Jenny Cui)

* Fixed a bug in NormalPower analysis, the comare curves panel was missing before
 * Classes changed:   
    analyses.gui.NormalPower(1.18-1.19)

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• 12/5/2007 (Jenny Cui)

* Fixed a bug in Analysis package, reset JTable data before setting the Example data(in doAnlaysis method reset xLength=0, yLength=0).
* Classes changed:   
     analyses.gui.Analysis(1.33- 1.34)
     analyses.gui.AnovaTwoWay(1.13-1.14)
     analyses.gui.ChiSquareModelFit(1.7-1.8)
     analyses.gui.DichotomousProportion(1.4-1.5)
     analyses.gui.OneT(1.10-1.11)
     analyses.gui.SimpleLinearRegression(1.16-1.17)
     analyses.gui.Survival(1.9-1.10)
     analyses.gui.TwoIndependentTPooled(1.2-1.3)
     analyses.gui.TwoIndependentUnpooled(1.2-1.3)
     analyses.gui.TwoIndependentWilcoxon(1.10-1.11)
* added Mean & SD for SimpleLinearRegression 's result panel
* Classes changed:   
     analyses.gui.SimpleLinearRegression(1.16-1.17)
     analyses.model.SimpleLinearRegression(1.7-1.8)
     analyses.result.SimpleLinearRegressionResult(1.8-1.9)

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• 11/28/2007 (Jenny Cui)

* Added  new classes to  analyses.command pacakge
* New classes added
    jars.CSVtesting.zip  -- include all the input txt file and script used for testing
    analyses.command. *CVS.java

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• 11/26/2007 (Jenny Cui)

   *For Charts and Analysis' "File Open" functoin , allow the first line with # in the front to be treated as table heading.
   *Classes changed: 
        core.SOCRChart(1.12-1.13)
        core.SOCRAnalysis(1.10-1.11)

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• 11/15/2007 (Jenny Cui)

 * Adding 2 histogram chart demo for BarCharts/XYCharts: 
           HistogramChartDemo6 (X value(in the form of numberA- numberB) is treated as range of number )
           HistogramChartDemo7 (X value is treated as string)
 *Classes changed: 
      chart. Chart(1.27->1.28)
      chart.SuperCategoryChart(1.5-1.6)
      chart.superIntervalXYChart(1.4-1.5)
      chart.data.DataConvertor(1.10-1.11)
      chart.demo.PowerTransformHistogramChart(1.10-1.11)
      chart.demo.PowerTransformNormalPlotChart(1.11-1.12)
      jars.implementedCharts.txt(1.17-1.18)
 * New classes added
         chart.demo.HistogramChartDemo6
         chart.demo.HistogramChartDemo7

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