SOCR EduMaterials AnalysesCommandLineTwoIndependentWilcoxon
This page includes the information on how to access the Chi-Square Model-Fit SOCR Analyses library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.
Contents
Introduction
In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.
General Usage
- Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
- The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
- All Input files are ASCII (see examples within each of the specific analyses).
- a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)
- Number of model parameters can be indicated at the end (after -h flag). If no number of model parameter is included, 0 is set defaulted.
Chi-Square Goodness of Fit Model Usage
- Generic Setting:
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.ChiSquareModelFitCSV [data_location]/c1.txt [data_location]/c2.txt -h [number_of_model_parameters;default_is_0]1
- Example: Edit a new file (ChiSquareModelFitCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script.
#!/bin/csh
date
java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.
stat.SOCR.analyses.command.ChiSquareModelFitCSV /cxfs/ccb/CCB_SW_Tools/others/Statist
ics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/c1.txt /cxfs/ccb/CCB_SW_Tools/others/S
tatistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/c2.txt -h 1
date
exit
Example Input data files
Two test datafiles are included with the SOCR analyses command-line distribution (c1.txt and c2.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
| c1.txt | c2.txt |
|---|---|
| OBS | EXP |
| 18.0 | 12.2 |
| 28.0 | 27.0 |
| 56.0 | 56.5 |
| 105.0 | 94.9 |
| 126.0 | 132.7 |
| 146.0 | 159.1 |
| 164.0 | 166.9 |
| 161.0 | 155.6 |
| 123.0 | 130.6 |
| 101.0 | 99.7 |
| 74.0 | 69.7 |
| 53.0 | 45.0 |
| 23.0 | 27.0 |
| 15.0 | 15.1 |
| 9.0 | 7.9 |
| 5.0 | 7.9 |
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