SOCR Data N46 TBI ROI Volumes

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SOCR Datasets - Acute and Chronic Traumatic Brain Injury (TBI) Neuroimaging study

Data Overview

TBI Brain Mapping

Examine the precise nature of localized brain atrophy in Traumatic Brain Injury (TBI) using non-invasive imaging methods may provide predictive biomarkers to identify patients at risk to develop Posttraumatic Epilepsy (PTE). Automated shape and volume analysis technique can disclose the presence of focal alteration in patients’ thalami after acute Traumatic Brain Injury.

Data Description and Variable Specification

Missing data were imputed using R's MI package.

  • ID: Unique subject identifier
  • Demographic variables:
    • age: subject age at injury time
    • sex: Males (0) and Females (1)
  • GCS (Glasgow Coma Scale)
    • field.gcs
    • er.gcs
    • icu.gcs
    • worst.gcs
  • GOSE (Extended Glasgow Outcome Scale)
    • X6m.gose
    • X2013.gose
  • Injury Type
    • skull.fx
    • temp.injury
    • surgery
  • PERSYT SPIKE DETECTION (EEG)
    • spikes.hr
    • min.hr
    • max.hr
  • Seizures: indicators of presence or absence of seizures
    • acute.sz: at acute state
    • late.sz: at chronic state
    • ever.sz: lifetime to date
  • Acute: observations typically within hours or days of injury
  • Chronic: observations 6-16 months following injury
  • Neuroimaging Morphometry measures
    • Global Measures (either at acute or chronic state):
      • TBV: total intercranial volume
      • GM: total Gray Matter volume
      • WM: Total White matter volume
      • CSF: total cerebro-spinal fluid in the brain
    • Local Measures of 56-ROI's: volumes of these regions of interest (either at acute or chronic state)

Dataset

Demographic and Clinical Data

ID DEMOGRAPHICS GCS GOSE INJURY_CHARACTERISTICS PERSYT_SPIKE_DETECTION SEIZURES
ID age sex(m0f1) field.gcs er.gcs icu.gcs worst.gcs X6m.gose X2013.gose skull.fx temp.injury surgery spikes.hr min.hr max.hr acute.sz late.sz ever.sz
1 19 0 10 10 10 10 5 5 0 1 1 31 18 329 1 1 1
2 55 0 9 3 3 3 5 7 1 1 1 169 14 757 0 1 1
3 24 0 12 12 8 8 7 7 1 0 0 37 0 351 0 0 0
4 57 1 4 4 6 4 3 3 1 1 1 4 0 59 0 0 0
5 54 1 14 11 8 8 5 7 0 1 1 55 0 284 0 0 0
7 21 0 3 3 6 3 3 3 1 0 1 98 0 39 0 0 0
9 30 0 3 9 3 3 3 5 1 1 1 44 0 367 0 1 1
10 38 0 3 6 6 3 3 3 1 1 1 46 4 107 0 1 1
11 43 0 8 7 7 7 6 7 1 0 1 8 0 72 0 0 0
12 40 0 12 14 14 12 7 8 0 1 1 27 0 125 0 0 0
13 21 0 12 13 9 9 7 7 1 0 1 -140 -34 19 0 1 1
14 35 1 6 5 6 5 5 7 1 1 0 65 0 655 1 1 1
15 59 0 14 14 0 0 8 8 1 1 0 104 29 719 0 0 0
16 32 0 5 6 3 3 4 5 1 0 0 99 -17 351 0 0 0
17 31 0 7 3 9 3 5 7 1 0 0 4 0 28 0 0 0
18 57 0 4 3 7 3 3 3 0 1 1 -150 -30 -303 0 1 1
19 18 0 4 3 6 3 5 3 1 1 1 40 -37 97 0 1 1
20 48 0 3 8 7 3 5 7 0 0 0 119 32 -73 0 0 0
22 22 0 3 3 3 3 2 2 1 1 1 10 0 80 0 1 1
23 20 0 15 14 13 13 5 8 1 1 1 144 9 410 0 1 1
24 41 0 3 3 6 3 3 7 1 0 0 36 -8 397 0 0 0
25 27 0 15 13 6 6 6 7 1 0 1 90 -6 290 0 0 0
26 23 0 14 14 7 7 4 7 1 1 1 46 -13 92 0 0 0
27 36 0 3 3 3 3 5 6 0 0 0 58 3 664 0 1 1
28 83 1 14 14 9 9 5 5 0 1 1 209 42 641 1 1 1
29 26 0 5 7 5 5 6 7 0 1 0 -13 -15 152 0 0 0
31 23 0 12 13 13 12 3 7 1 0 1 75 13 155 0 0 0
32 45 0 6 6 6 6 3 6 0 0 1 105 -17 483 0 0 0
33 18 0 8 8 7 7 7 7 0 0 0 7 0 20 0 1 1
34 34 0 7 7 3 3 4 6 0 1 1 48 0 226 0 1 1
35 19 0 3 7 7 3 7 8 0 0 0 97 0 300 0 0 0
36 77 1 3 6 3 3 3 3 1 1 0 7 0 31 0 1 1
37 75 0 14 14 12 7 5 8 1 0 0 6 0 42 0 1 1
38 25 0 14 18 6 6 8 8 0 0 1 30 0 175 1 0 1
39 62 1 12 8 8 8 3 3 0 1 1 6 0 33 0 1 1
40 41 0 7 3 7 3 5 5 1 1 1 2 0 23 0 1 1
41 60 0 3 12 7 3 3 5 1 1 0 4 0 12 0 1 1
42 29 1 9 14 3 3 8 7 1 0 1 43 -13 504 0 1 1
43 48 0 12 12 11 11 6 7 0 0 1 5 0 43 0 0 0
44 41 0 3 3 3 3 2 2 1 1 0 1 0 15 1 1 1
45 34 0 6 8 3 3 3 3 1 1 1 214 3 824 1 1 1
46 25 1 6 8 3 3 8 7 0 1 0 2 0 36 0 0 0

Acute State Neuroimaging Data

Acute(mm3) TBV GM WM CSF Background L_superior_frontal_gyrus R_middle_frontal_gyrus R_precuneus cerebellum L_angular_gyrus R_cingulate_gyrus L_middle_temporal_gyrus R_lingual_gyrus L_superior_temporal_gyrus L_fusiform_gyrus R_superior_parietal_gyrus R_inferior_occipital_gyrus L_parahippocampal_gyrus R_caudate L_inferior_temporal_gyrus brainstem L_superior_parietal_gyrus R_precentral_gyrus L_middle_frontal_gyrus L_lingual_gyrus L_postcentral_gyrus R_inferior_temporal_gyrus L_putamen R_inferior_frontal_gyrus R_insular_cortex L_inferior_frontal_gyrus R_supramarginal_gyrus R_gyrus_rectus L_inferior_occipital_gyrus R_putamen L_superior_occipital_gyrus R_middle_orbitofrontal_gyrus R_postcentral_gyrus L_precentral_gyrus R_lateral_orbitofrontal_gyrus L_cingulate_gyrus L_lateral_orbitofrontal_gyrus R_fusiform_gyrus L_supramarginal_gyrus R_parahippocampal_gyrus R_superior_frontal_gyrus L_middle_orbitofrontal_gyrus R_cuneus R_superior_occipital_gyrus L_gyrus_rectus R_angular_gyrus R_middle_occipital_gyrus R_middle_temporal_gyrus L_precuneus L_cuneus L_caudate L_hippocampus R_hippocampus R_superior_temporal_gyrus L_middle_occipital_gyrus L_insular_cortex L_Thalamus R_Thalamus
2 1458326 400182 737989 320155 2851490 79891 50936 13450 139564 22266 19285 27932 21430 26588 20095 32781 10580 6797 3144 20895 43711 32574 27752 60378 20586 27865 21814 1584 34150 11280 30430 11723 3896 9949 4737 10488 13021 29917 35581 4883 16271 6459 16393 10463 10392 84613 11885 7633 11540 4085 21346 34046 31597 16628 7360 1347 3445 3419 31320 24888 7203 3000 3000
3 1317087.125 640414.4375 532688.375 143984.25 2855698 70210 39167 14099 173202 23597 23250 28123 19632 30703 20755 28539 8000 7195 2893 23327 38714 32526 28343 65575 18459 23239 20843 3375 34054 9784 28513 10811 3516 9214 2332 9778 12660 25625 34150 8430 17065 9250 14456 11210 8910 80746 11959 6829 10540 4073 19400 29755 31032 13972 7584 2240 4667 4209 31213 26147 12188 2369 2415
4 1181208 607794.375 415649.0625 157764.6406 2856337 68170 43298 14525 155271 18958 24073 25963 19013 29486 24082 30594 7563 7854 3828 22195 40435 33134 29638 60258 22354 25765 23693 4690 34328 10155 30150 11416 3474 10895 3661 8248 13406 26172 36793 6764 16041 7481 14711 11345 10104 85110 12711 6835 10502 3194 20247 27616 31916 16875 8877 3431 4629 4431 31996 20291 10794 1906 2018
5 1222690.875 408293.1563 644690.125 169707.6406 2849749 68755 40592 13611 154559 23097 22177 30225 21223 32813 22345 31424 9399 7320 3953 27955 34105 33624 29020 69563 18247 23978 21569 4136 35180 11610 31114 11587 3027 8574 3653 9387 14211 25176 34093 8258 13994 8143 15407 13201 9422 76441 11047 8619 11329 3816 21806 30408 31876 14129 5761 2284 4863 4315 32703 25920 10983 2316 1885
7 1276169 598918.875 514287.0625 162963.125 2879988 63410 44481 11934 129159 20428 23006 27032 21430 27619 23800 30790 11931 6826 2534 25605 35617 31251 26653 62919 20466 25678 21422 4703 36208 9945 30557 11232 3800 9356 3407 9248 14425 26412 32752 6529 17674 8924 18064 12779 10549 80933 13740 7195 12371 2301 21271 30866 31523 16496 7442 3189 4515 4157 31859 27075 10300 2808 3856
9 1262723 518852 533773 210098 2879268 60553 51387 12282 174414 24330 18067 21806 19253 27001 8080 29001 13508 6701 2347 13107 46917 32567 29891 55237 17183 28175 22136 2783 46850 8368 29623 12939 4144 6729 2065 10847 17183 27107 38211 9241 18202 6077 17102 12299 9317 52143 12738 7177 11433 4409 21782 37195 35140 16439 8268 1772 2421 3815 27610 26503 4633 2882 2064
10 1177401.125 563714.9375 438628.25 175057.9531 2908264 69169 43283 14031 93213 23427 21485 30043 19882 31107 23818 29916 9088 6985 3831 29251 36775 30309 28442 68612 19551 25238 22971 4384 32760 8493 28453 13092 3452 8506 3833 9202 12475 26909 34473 5447 16353 6884 16128 11652 9226 86738 13184 5641 10156 1764 21543 31995 34386 16795 9018 2667 4446 3743 33616 20194 9477 2176 1832
11 1317000.875 561232.9375 615427.25 140340.5938 2851113 79841 52446 12860 149850 16949 20044 26361 20082 30204 22154 32315 11724 7315 2306 21599 35824 29194 29403 56215 19162 26853 21187 2935 42041 10863 26532 13484 2482 11509 2967 8492 15910 28821 34221 11496 17895 8175 17765 10781 10353 72770 13360 7237 10219 3978 22671 29512 32217 17491 7171 2631 3628 4186 34868 22688 9426 2417 1912
13 1541888.125 674973.25 650828.6875 216086.2188 2793822 75850 48567 12779 143920 25273 19777 27331 20685 26609 23427 33671 12342 7224 1348 25663 38082 33576 30442 66898 22422 25740 24676 4059 35410 9247 32119 14188 4744 12239 2632 9064 16671 27635 34511 6891 17883 8933 17319 11896 10816 82430 15436 6624 10036 3858 29178 38270 33783 17404 8594 2480 3499 3662 32898 31611 9632 8876 11984
14 1148906 548720 458865.5 141320.5 2825930 64997 42167 16042 146070 22294 25914 29972 22447 28274 25153 32619 12886 6824 1896 32707 38824 34639 28722 67720 17200 25811 23945 4324 29602 10106 29721 11119 4532 9481 3999 9562 13468 25917 37792 6058 12661 7594 18939 12868 10682 86638 14238 9520 12297 3478 20905 31111 32977 12126 5750 2415 4297 4617 33982 28474 11473 14582 9808
15 1141749.125 525611.9375 461115.5313 155021.5938 2844550 62322 43420 14652 169722 23760 23661 26772 20212 27381 19273 32753 10766 6907 3524 24223 35489 32554 27474 58594 17231 28069 22112 3162 35857 9391 33298 10410 3089 7578 3513 9121 14861 28301 37811 7998 14382 7832 18369 11662 11809 79138 13044 7784 11275 2620 20510 31296 31576 15297 6870 2327 4115 4881 34773 26564 9841 9140 20277
16 1196047.75 497405.875 541644.625 156997.2188 2834970 70135 42443 13060 166075 21445 20792 27813 19017 29389 20433 32565 7338 7108 2719 22762 37186 29093 28495 60344 21337 26382 22793 4784 34799 9988 27211 13952 3957 9477 3781 8602 15052 30148 36778 7280 15887 7958 15349 11340 10296 87929 13933 4049 11647 2887 24170 27211 31508 18198 10228 2742 4743 4411 36706 25082 9999 11229 21655
17 1240134.5 475950 538198.75 225985.75 2861574 60619 50560 14097 138834 24917 22205 26244 22491 22177 23519 28438 12945 8442 2574 24724 39540 30612 28423 69752 17175 25595 22274 2630 33740 8227 32592 12018 2518 9603 2392 9484 16655 25780 36792 3755 14625 7544 17380 13189 11872 88429 15434 7334 10667 734 20069 34225 32232 15235 6164 1868 2692 4079 32801 25750 9536 10942 13531
19 1285788.5 441545 688279.25 155964.25 2897999 91640 56853 11520 160884 18074 15064 26686 18998 31809 22766 26952 10189 6709 2508 22011 42510 26978 29614 60896 20471 25696 13734 1219 33763 8610 30036 14206 2329 8454 2598 7352 17034 29486 31146 4249 15877 6818 14234 9734 10917 59761 13167 7720 8485 4104 18829 26860 28331 16051 6514 1081 2573 2294 32673 23116 5594 13443 12536
20 1160095 522435.25 532090.75 105569.0469 2917918 76640 56615 13451 79685 21498 18836 28819 20573 28981 24192 29005 9866 8051 2189 22218 40786 33341 28093 66717 19930 26548 22102 3247 42320 10284 28100 12525 1479 9872 3659 9117 17479 26934 38325 7812 14856 5538 19295 11253 12377 66556 13855 7280 10116 3033 21170 32541 29773 15181 6017 1949 3583 3300 27768 23383 9745 11979 16778
23 1175587.75 455001.25 538438.25 182148.25 2902381 65590 45294 12617 165022 19662 20486 24480 22110 27625 19547 30536 12201 6675 1291 16643 38618 31730 33487 58922 18041 26232 18759 2890 48445 8871 28013 14710 1457 5947 3108 9593 13607 28693 36465 8157 18242 7057 15952 10392 10680 40723 13445 7248 9769 3292 21760 30724 31892 15021 6244 1560 4140 4415 32799 22569 9947 16982 28884
24 1220229 501386.75 534759 184083.25 2840224 76497 44381 13297 156423 21944 23767 27126 20419 25753 23048 31045 11757 6923 2945 25418 35824 27450 28833 64101 19053 24491 21685 3824 30172 9286 29498 12203 4512 11217 3030 8311 15134 26110 35303 7024 16253 7341 19861 12387 11731 90219 13930 6977 10203 3273 19222 32573 29566 16158 7494 2998 4107 4639 30714 27547 10555 6164 14501
27 1546164.25 465992.75 803150.5 277021 2838690 63088 47893 14252 161256 22169 23912 29840 20198 32668 22948 29764 11547 7189 2367 27297 36565 32390 28182 68035 17677 24282 23601 3078 33431 9845 30203 12044 3602 10135 3262 9273 14037 28621 37432 6008 15502 7406 17759 11780 10172 76004 13971 7788 11352 3052 19780 30654 32530 13420 5896 2241 4183 3923 34218 27051 10313 16131 31871
28 1168390 534171 410005 224214 2898985 73646 45858 13623 111707 25352 20595 28312 23241 26104 22823 30935 11694 5477 4611 25209 35056 33177 28027 66028 18043 27799 20988 3918 31920 10652 29052 12130 3191 10378 3060 9476 13619 27312 35200 4619 14456 8371 17234 12484 9710 77499 16626 7859 9983 1852 19727 26152 29496 14001 7334 1980 2874 4122 34970 26753 10476 4477 5010
32 1297888 524578 579400 193910 2867436 68520 46957 14827 138058 27013 23012 29213 21114 28581 22884 29631 10677 6566 1238 25346 36378 34341 28780 65096 17583 29081 19955 4406 32915 7649 30985 11241 5039 8572 2114 10068 13669 27311 35584 6464 13105 7385 18493 14062 10478 78649 13587 9303 12083 3742 20993 33677 26526 12140 6834 2695 4203 4020 30075 25917 9505 4388 3796
34 1275327 532686 539831 202810 2837160 69018 47093 12368 139307 20155 18763 27313 19991 27992 24487 30467 9834 7547 2288 25156 40360 28445 32732 65504 19274 25680 24899 4596 39288 8192 28759 11896 3295 9142 3458 8985 16262 28723 38207 8469 17205 6873 17949 11437 9870 86692 11399 6726 11074 3952 20143 33508 33880 18655 8920 2927 4815 4494 33162 28042 8948 5991 5777
35 1528446 647185 643293 237968 2867858 63338 42023 13797 153425 24859 18507 27347 18700 27717 22470 31540 9613 7128 3905 21288 36349 30173 26811 58625 17599 26838 19868 4639 33912 9177 29924 11356 4239 9154 3624 9476 14942 26426 36540 7845 16081 8294 18116 13058 10438 84308 13738 6991 11778 2734 23670 34330 27863 17984 8498 2571 4237 3717 30416 27910 8012 5448 6854
38 1409718 427426 551786 430506 2806824 65469 43774 15159 176466 23509 21934 29002 18108 31747 18599 33435 9119 8519 2430 26722 40802 34160 28851 69413 18685 27466 22054 5079 35481 8544 27405 11279 3046 7857 3568 9790 13581 29145 37801 6460 13536 5925 13999 11448 10287 86856 14283 7131 11170 2400 23227 31222 34887 12538 7761 2895 4290 3969 34722 30732 11215 5086 6553
39 1099880 630056 148901 320923 2829497 61453 41116 13626 174206 21722 22915 27526 19145 30821 23308 32035 8172 7896 1314 22246 39637 31246 27533 63814 19119 29232 20952 4190 33361 6496 34358 9972 4033 6673 2641 8812 15220 27491 42895 8516 13470 6988 14884 11171 11184 86381 13330 6890 11734 2803 20506 30939 36445 17043 8126 2230 4240 3312 36061 26471 8379 4101 4731
40 1321243 513488 466319 341436 2831097 68782 43879 15061 135567 23184 20993 23885 22950 28568 24227 30424 12994 7875 3509 15266 40819 32640 31129 69231 20544 28255 19034 3889 38385 8581 35030 14143 4160 12698 3547 8777 15045 30175 37737 7491 15184 8995 16919 14231 9761 88143 15686 7311 9910 2792 19939 29722 31862 15690 6646 2349 3992 3085 35630 26173 12185 4073 5535
41 1200586 715684 188483 296419 2839652 88176 58155 15255 163348 21221 19251 28315 20748 31541 16582 30182 8988 6697 2252 11689 38884 31925 33488 60310 20567 27446 18762 3002 38700 6856 24890 12635 2637 7305 2229 9190 14704 31682 37074 6994 17575 7089 11570 12937 9293 81555 12618 8683 10133 4168 21516 30085 34406 12240 6516 2483 1828 1828 35188 24261 8472 4251 5921
42 1274869 751131 224085 299653 2832611 73120 48225 14522 172350 24380 21520 26298 19851 31146 18247 30285 6154 7437 2956 19825 35414 31200 30914 65795 19344 26855 18015 5129 34871 7766 30144 12021 3307 6435 2049 9723 14042 29176 36063 7124 16511 8252 14281 11554 9544 84419 11681 7355 11607 4077 21360 31017 34544 13209 7547 3468 4145 3337 37064 26488 10002 3741 3914
43 1243477 798507 194642 250328 2954709 56433 47121 13070 147784 15458 14622 26317 20615 29963 18179 29160 9639 5954 1651 18308 37460 29879 28847 59306 18432 28771 18278 495 45586 5026 29725 10199 1443 10228 573 9411 13730 28947 38001 8872 12814 7043 10737 10656 9700 58089 13290 9105 10213 3725 17695 28151 30653 15981 7167 1929 2479 2991 37351 21612 2203 2197 3031
44 1319813.75 678211 386157 255445.75 2857415 74349 54477 12230 113953 20964 19421 27845 24180 29624 23832 30677 13602 6824 2134 24585 42719 30945 34006 62663 21283 26328 22315 3850 44897 7695 30649 12867 2430 10622 1578 8843 10574 34177 38225 7674 19167 7546 20419 12712 11355 59599 12436 8463 10349 4650 21323 34110 32199 16562 7884 1088 3684 3717 31628 26957 9476 9230 16134
45 1191539 389295 609216 193028 2831052 67408 42048 13940 146622 24441 22036 30430 21732 28958 27218 30446 10729 8217 2755 26568 44074 33143 30383 68826 19143 25432 20323 4932 33871 8786 30672 13249 4238 10094 3127 9281 14410 29457 34837 5838 15419 6566 16732 14495 11098 75713 16048 8450 10510 3805 22093 30973 32850 11920 5871 1983 4468 3536 34646 28229 11655 3177 3868
46 1321693 742213 137475 442005 2836268 64741 43536 12567 172107 20752 23143 28706 22373 29187 24415 30208 10339 6834 2172 25719 40429 27833 27794 63859 19535 24720 22098 4346 33793 8884 28974 10067 3898 11483 3679 9438 14999 29747 36341 7086 14194 8174 16628 9786 10960 79095 12637 7356 10618 2474 20169 32000 35769 17348 7322 2450 4676 4710 34230 24078 9032 4328 5570

Chronic State Neuroimaigng Data

56 ROI Nomenclature

Index Volume_Intensity down ROI_Name
0 0 Background
1 21 L_superior_frontal_gyrus
41 22 R_superior_frontal_gyrus
19 23 L_middle_frontal_gyrus
2 24 R_middle_frontal_gyrus
26 25 L_inferior_frontal_gyrus
24 26 R_inferior_frontal_gyrus
34 27 L_precentral_gyrus
18 28 R_precentral_gyrus
42 29 L_middle_orbitofrontal_gyrus
32 30 R_middle_orbitofrontal_gyrus
37 31 L_lateral_orbitofrontal_gyrus
35 32 R_lateral_orbitofrontal_gyrus
45 33 L_gyrus_rectus
28 34 R_gyrus_rectus
21 41 L_postcentral_gyrus
33 42 R_postcentral_gyrus
17 43 L_superior_parietal_gyrus
11 44 R_superior_parietal_gyrus
39 45 L_supramarginal_gyrus
27 46 R_supramarginal_gyrus
5 47 L_angular_gyrus
46 48 R_angular_gyrus
49 49 L_precuneus
3 50 R_precuneus
31 61 L_superior_occipital_gyrus
44 62 R_superior_occipital_gyrus
55 63 L_middle_occipital_gyrus
47 64 R_middle_occipital_gyrus
29 65 L_inferior_occipital_gyrus
12 66 R_inferior_occipital_gyrus
50 67 L_cuneus
43 68 R_cuneus
9 81 L_superior_temporal_gyrus
54 82 R_superior_temporal_gyrus
7 83 L_middle_temporal_gyrus
48 84 R_middle_temporal_gyrus
15 85 L_inferior_temporal_gyrus
22 86 R_inferior_temporal_gyrus
13 87 L_parahippocampal_gyrus
40 88 R_parahippocampal_gyrus
20 89 L_lingual_gyrus
8 90 R_lingual_gyrus
10 91 L_fusiform_gyrus
38 92 R_fusiform_gyrus
56 101 L_insular_cortex
25 102 R_insular_cortex
36 121 L_cingulate_gyrus
6 122 R_cingulate_gyrus
51 161 L_caudate
14 162 R_caudate
23 163 L_putamen
30 164 R_putamen
52 165 L_hippocampus
53 166 R_hippocampus
4 181 cerebellum
16 182 brainstem

References





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