Difference between revisions of "SOCR Analyses Expansion"
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===Project Goal=== | ===Project Goal=== | ||
To expand, and redesign as necessary, the current collection of [[SOCR]] [http://www.socr.ucla.edu/htmls/ana Analyses Tools]. This may involve implementing new SOCR analyses applets, redesigning the analyses as HTML5/JavaScript, refactoring and improving the organization of the SOCR Analyses package, extend the command-line SOCR analysis interface, etc. | To expand, and redesign as necessary, the current collection of [[SOCR]] [http://www.socr.ucla.edu/htmls/ana Analyses Tools]. This may involve implementing new SOCR analyses applets, redesigning the analyses as HTML5/JavaScript, refactoring and improving the organization of the SOCR Analyses package, extend the command-line SOCR analysis interface, etc. | ||
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===Background=== | ===Background=== | ||
Explore and research the [http://www.socr.ucla.edu/htmls/ana SOCR Analyses] first. The Analyses package is one of the major SOCR packages and consists of a collection of applets that enables the statistical modeling, analysis and inference on user provided data. It currently has parametric and non-parametric, linear and non-linear, quantitative and qualitative, univariate and multivariate types of analyses. | Explore and research the [http://www.socr.ucla.edu/htmls/ana SOCR Analyses] first. The Analyses package is one of the major SOCR packages and consists of a collection of applets that enables the statistical modeling, analysis and inference on user provided data. It currently has parametric and non-parametric, linear and non-linear, quantitative and qualitative, univariate and multivariate types of analyses. | ||
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===Project specs=== | ===Project specs=== | ||
* All code must be pure Java, compatible with Java 1.4, and integrates with [http://code.google.com/p/socr/source/browse/#svn%2Ftrunk%2FSOCR2.6 entire SOCR code]. | * All code must be pure Java, compatible with Java 1.4, and integrates with [http://code.google.com/p/socr/source/browse/#svn%2Ftrunk%2FSOCR2.6 entire SOCR code]. | ||
| + | * [[SOCR_EduMaterials_AnalysesCommandLine|try to also provide a command-line invocation of the new SOCR Analysis applet]], see the [http://code.google.com/p/socr/source/browse/#svn%2Ftrunk%2FSOCR2.6%2Fsrc%2Fedu%2Fucla%2Fstat%2FSOCR%2Fanalyses%2Fcommand examples of SOCR command-line source-code]. The command-line interface is useful for pipelining SOCR analysis tools as part of various [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111084/ heterogeneous graphical workflow environments]. | ||
===Adding new SOCR Analyses=== | ===Adding new SOCR Analyses=== | ||
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* [[About_pages_for_SOCR_Analyses| About Analyses Page]] | * [[About_pages_for_SOCR_Analyses| About Analyses Page]] | ||
* [[Help_pages_for_SOCR_Analyses| Help Pages]] | * [[Help_pages_for_SOCR_Analyses| Help Pages]] | ||
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| + | ====Adding a Hierarchical Clustering and Classification Analysis==== | ||
| + | Consider adding a new SOCR Hierarchical Data Clustering and Classification analysis applet. Below are some useful resources: | ||
| + | * Utilize the [http://cran.r-project.org/web/packages/FactoMineR/index.html FactoMineR R package]: | ||
| + | ** [http://factominer.free.fr/ FactoMineR homepage] and [http://cran.r-project.org/web/packages/FactoMineR/FactoMineR.pdf Reference manual (PDF)] | ||
| + | ** [http://cran.r-project.org/src/contrib/FactoMineR_1.18.tar.gz C/C++ Source code (Tar.gz)] | ||
| + | ** [http://factominer.free.fr/docs/HCPC_husson_josse.pdf See this use-case for usage and validation of Java implementation (PDF)] | ||
| + | ** [[SOCR_Data_NIPS_InfantVitK_ShotData|Test data]] | ||
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=== Command-line SOCR analysis interface=== | === Command-line SOCR analysis interface=== | ||
To extend the command-line SOCR analysis interface, see the following resources: | To extend the command-line SOCR analysis interface, see the following resources: | ||
* [[SOCR_EduMaterials_AnalysesCommandLine|SOCR Command-line Docs]] | * [[SOCR_EduMaterials_AnalysesCommandLine|SOCR Command-line Docs]] | ||
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===References=== | ===References=== | ||
Revision as of 17:51, 10 April 2012
SOCR Project - SOCR Analyses Expansion Project
Project Goal
To expand, and redesign as necessary, the current collection of SOCR Analyses Tools. This may involve implementing new SOCR analyses applets, redesigning the analyses as HTML5/JavaScript, refactoring and improving the organization of the SOCR Analyses package, extend the command-line SOCR analysis interface, etc.
Background
Explore and research the SOCR Analyses first. The Analyses package is one of the major SOCR packages and consists of a collection of applets that enables the statistical modeling, analysis and inference on user provided data. It currently has parametric and non-parametric, linear and non-linear, quantitative and qualitative, univariate and multivariate types of analyses.
Project specs
- All code must be pure Java, compatible with Java 1.4, and integrates with entire SOCR code.
- try to also provide a command-line invocation of the new SOCR Analysis applet, see the examples of SOCR command-line source-code. The command-line interface is useful for pipelining SOCR analysis tools as part of various heterogeneous graphical workflow environments.
Adding new SOCR Analyses
To expand the framework of SOCR analyses, first review the following resources:
Adding a Hierarchical Clustering and Classification Analysis
Consider adding a new SOCR Hierarchical Data Clustering and Classification analysis applet. Below are some useful resources:
- Utilize the FactoMineR R package:
Command-line SOCR analysis interface
To extend the command-line SOCR analysis interface, see the following resources:
References
The following references would be useful for this project:
- This Wiki Project Description
- SOCR Source Code
- Available/Implemented SOCR Analyses
- Modeler Activities
- Analyses Source Code
Available_SOCR_Development_Projects
SOCR_ProposalSubmissionGuidelines
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