SOCR Analyses Expansion

SOCR Project - SOCR Analyses Expansion Project

Project Goal

To expand, and redesign as necessary, the current collection of SOCR Analyses Tools. This may involve implementing new SOCR analyses applets, redesigning the analyses as HTML5/JavaScript, refactoring and improving the organization of the SOCR Analyses package, extend the command-line SOCR analysis interface, etc.

Background

Explore and research the SOCR Analyses first. The Analyses package is one of the major SOCR packages and consists of a collection of applets that enables the statistical modeling, analysis and inference on user provided data. It currently has parametric and non-parametric, linear and non-linear, quantitative and qualitative, univariate and multivariate types of analyses.

Project specs

• All code must be pure Java, compatible with Java 1.4, and integrates with entire SOCR code.
• try to also provide a command-line invocation of the new SOCR Analysis applet, see the examples of SOCR command-line source-code. The command-line interface is useful for pipelining SOCR analysis tools as part of various heterogeneous graphical workflow environments.

Adding new SOCR Analyses

To expand the framework of SOCR analyses, first review the following resources:

• SOCR Analyses Docs
• SOCR Analysis Applets
• SOCR Analysis Package Doc
• About Analyses Page
• Help Pages

Adding a Hierarchical Clustering and Classification Analysis

Consider adding a new SOCR Hierarchical Data Clustering and Classification analysis applet. Below are some useful resources:

• Utilize the FactoMineR R package:
  • FactoMineR homepage and Reference manual (PDF)
  • C/C++ Source code (Tar.gz)
  • See this use-case for usage and validation of Java implementation (PDF)
  • Test data: SOCR Neonate Infant Pain Score (NIPS) Data (Vitamin K shots)

Command-line SOCR analysis interface

To extend the command-line SOCR analysis interface, see the following resources:

• SOCR Command-line Docs

References

The following references would be useful for this project:

• This Wiki Project Description
• SOCR Source Code
• Available/Implemented SOCR Analyses
• Modeler Activities
• Analyses Source Code

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SOCR_ProposalSubmissionGuidelines

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• SOCR JavaDoc

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