Difference between revisions of "SOCR EduMaterials AnalysesCommandLine"

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* All Input files are ASCII (see examples within each of the specific analyses).
 
* All Input files are ASCII (see examples within each of the specific analyses).
 
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data).
 
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data).
* When running large Java jobs on Grid architectures or when submitting jobs via ''qsub'', the following specification to request additional memory may be useful to avoid ''OutOfMemoryExceptions'': ''h_vmem=4.5G''
+
* When running large Java jobs on Grid architectures or when submitting jobs via ''qsub'', the following specification to request additional memory may be useful to avoid ''OutOfMemoryExceptions'': ''h_vmem=4.5G'':
: <code>qsub -q short.q -t 1:12 -l h_vmem=4.5G,h_stack=10M VolumeMultipleRegression_FA.tcsh</code>.
+
: <code>qsub -q short.q -t 1:12 -l h_vmem=4.5G,h_stack=10M VolumeMultipleRegression_FA.tcsh</code>
 
 
  
 
===Analysis-specific Usage===
 
===Analysis-specific Usage===

Revision as of 16:34, 24 June 2009

This page includes the information on how to access the SOCR Analyses libraries for statistical computing via shell-based command-line interface on local machines. More information about SOCR Analyses is available here.

Introduction

In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.

General Usage

  • Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
  • The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
  • All Input files are ASCII (see examples within each of the specific analyses).
  • a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data).
  • When running large Java jobs on Grid architectures or when submitting jobs via qsub, the following specification to request additional memory may be useful to avoid OutOfMemoryExceptions: h_vmem=4.5G:
qsub -q short.q -t 1:12 -l h_vmem=4.5G,h_stack=10M VolumeMultipleRegression_FA.tcsh

Analysis-specific Usage

Specific Volumetric Analyses





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